Evidence map›Paper›PMID 32763141›Full record

ArticleStructure (London, England : 1993)2020

A Single-Molecule Surface-Based Platform to Detect the Assembly and Function of the Human RNA Polymerase II Transcription Machinery.

Sang Ryul Park, Jesse Hauver, Yunxiang Zhang, Andrey Revyakin, Robert A Coleman, Robert Tjian, Steven Chu, Alexandros Pertsinidis

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Chromosome topology gates productive RecA homology search.bioRxiv : the preprint server for biology · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Revisiting the Glass Treatment for Single-Molecule Analysis of ncRNA Function.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  11. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Sang Ryul ParkCalifornia Institute for Quantitative Biosciences (QB3), University of California at Berkeley, Berkeley, CA 94720, USA; Howard Hughes Medical Institute, Department of Molecular and Cell Biology, University of California at Berkeley, Berkeley, CA 94720, USA.
Jesse HauverStructural Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA; Tri-Institutional Training Program in Chemical Biology, New York, NY 10065, USA.
Yunxiang ZhangDepartments of Physics and Molecular and Cellular Physiology, Stanford University, Stanford CA 94305, USA.
Andrey RevyakinCalifornia Institute for Quantitative Biosciences (QB3), University of California at Berkeley, Berkeley, CA 94720, USA; Howard Hughes Medical Institute, Department of Molecular and Cell Biology, University of California at Berkeley, Berkeley, CA 94720, USA.
Robert A ColemanHoward Hughes Medical Institute, Department of Molecular and Cell Biology, University of California at Berkeley, Berkeley, CA 94720, USA.
Robert TjianHoward Hughes Medical Institute, Department of Molecular and Cell Biology, University of California at Berkeley, Berkeley, CA 94720, USA.
Steven ChuDepartments of Physics and Molecular and Cellular Physiology, Stanford University, Stanford CA 94305, USA. Electronic address: schu@stanford.edu.
Alexandros PertsinidisStructural Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA. Electronic address: pertsina@mskcc.org.
Howard Hughes Medical Institute · USMemorial Sloan Kettering Cancer Center · USQB3 · USStanford University · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Surface Analysis Facility for Biomedical ProblemsP41EB002027 · NIBIB · UNIVERSITY OF WASHINGTON · PI CASTNER, DAVID G, GAMBLE, LARA · 2003 to 2019
$17.6M
Structure and Function of Transcription ComplexesP01CA112181 · NCI · UNIVERSITY OF CALIFORNIA BERKELEY · PI TJIAN, ROBERT TSE NAN · 2005 to 2009
$5.7M
Understanding Gene Transcription from First-Principles: A single-molecule studyDP2GM105443 · NIGMS · SLOAN-KETTERING INST CAN RESEARCH · PI PERTSINIDIS, ALEXANDROS · 2012 to 2012
$2.6M
NCI NIH HHS P01 CA112181NCI NIH HHS P30 CA008748NIBIB NIH HHS P41 EB002027NIGMS NIH HHS DP2 GM105443
6 · The paper itself

Abstract

Single-molecule detection and manipulation is a powerful tool for unraveling dynamic biological processes. Unfortunately, success in such experiments is often challenged by tethering the biomolecule(s) of interest to a biocompatible surface. Here, we describe a robust surface passivation method by dense polymer brush grafting, based on optimized polyethylene glycol (PEG) deposition conditions, exactly at the lower critical point of an aqueous biphasic PEG-salt system. The increased biocompatibility achieved, compared with PEG deposition in sub-optimal conditions away from the critical point, allowed us to successfully detect the assembly and function of a large macromolecular machine, a fluorescent-labeled multi-subunit, human RNA Polymerase II Transcription Pre-Initiation Complex, on single, promoter-containing, surface-immobilized DNA molecules. This platform will enable probing the complex biochemistry and dynamics of large, multi-subunit macromolecular assemblies, such as during the initiation of human RNA Pol II transcription, at the single-molecule level.

Indexed as

HumansPromoter Regions, GeneticProtein MultimerizationRNA Polymerase IISingle Molecule ImagingTranscription, GeneticRNA Polymerase IIgeneral transcription factorsPEGpol IIpolyethylene glycolpolymer brushesPre-Initiation ComplexRNA Polymerasesingle-molecule assayssurface passivationtranscription

Identifiers

PMID32763141
PMCPMC7710921
OpenAlexW3047505296

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.