Evidence map›Paper›PMID 32762648›Full record

ArticleBMC plant biology2020

Molecular characterization of an anthocyanin-related glutathione S-transferase gene in Japanese gentian with the CRISPR/Cas9 system.

Keisuke Tasaki, Momo Yoshida, Minori Nakajima, Atsumi Higuchi, Aiko Watanabe, Masahiro Nishihara

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 46 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Downregulation of a Phi class glutathionePlant biotechnology (Tokyo, Japan) · 2024
    Article
  8. Review
  9. Review
  10. Review
  11. Article
  12. Anthocyanin metabolic engineering ofFrontiers in plant science · 2023
    Review
  13. Review
  14. Article
  15. Review
  16. Article
  17. Isolation and Functional Analysis ofInternational journal of molecular sciences · 2022
    Article
  18. Article
  19. Review
  20. Anthocyanin Pigments: Beyond Aesthetics.Molecules (Basel, Switzerland) · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Keisuke TasakiIwate Biotechnology Research Center, 22-174-4 Narita, Kitakami, Iwate, 024-0003, Japan.
Momo YoshidaTokyo University of Agriculture, 1737 Funako, Atsugi, Kanagawa, 243-0034, Japan.
Minori NakajimaTokyo University of Agriculture, 1737 Funako, Atsugi, Kanagawa, 243-0034, Japan.
Atsumi HiguchiIwate Biotechnology Research Center, 22-174-4 Narita, Kitakami, Iwate, 024-0003, Japan.
Aiko WatanabeIwate Biotechnology Research Center, 22-174-4 Narita, Kitakami, Iwate, 024-0003, Japan.
Masahiro NishiharaIwate Biotechnology Research Center, 22-174-4 Narita, Kitakami, Iwate, 024-0003, Japan. mnishiha@ibrc.or.jp.ORCID http://orcid.org/0000-0002-1454-8785
Iwate Biotechnology Research Center · JPTokyo University of Agriculture · JP

Funding

Grants-in-Aid for Scientific Research from the Japan Society for the Promotion of Science 16K18654Grants-in-Aid for Scientific Research from the Japan Society for the Promotion of Science 18K14462Ministry of Agriculture, Forestry and Fisheries 15653424Ministry of Agriculture, Forestry and Fisheries 19190722_
6 · The paper itself

Abstract

backgroundThe blue pigmentation of Japanese gentian flowers is due to a polyacylated anthocyanin, gentiodelphin, and all associated biosynthesis genes and several regulatory genes have been cloned and characterized. However, the final step involving the accumulation of anthocyanins in petal vacuoles remains unclear. We cloned and analyzed the glutathione S-transferases (GSTs) in Japanese gentian that are known to be involved in anthocyanin transport in other plant species.

resultsWe cloned GST1, which is expressed in gentian flower petals. Additionally, this gene belongs to the Phi-type GST clade related to anthocyanin biosynthesis. We used the CRISPR/Cas9-mediated genome editing system to generate loss-of-function GST1 alleles. The edited alleles were confirmed by Sanger and next-generation sequencing analyses. The GST1 genome-edited lines exhibited two types of mutant flower phenotypes, severe (almost white) and mild (pale blue). The phenotypes were associated with decreased anthocyanin accumulation in flower petals. In the GST1 genome-edited lines, sugar-induced stress conditions inhibited the accumulation of anthocyanins in stems and leaves, suggestvhing that GST1 is necessary for stress-related anthocyanin accumulation in organs other than flowers. These observations clearly demonstrate that GST1 is the gene responsible for anthocyanin transport in Japanese gentian, and is necessary for the accumulation of gentiodelphin in flowers.

conclusionsIn this study, an anthocyanin-related GST gene in Japanese gentian was functionally characterized. Unlike other biosynthesis genes, the functions of GST genes are difficult to examine in in vitro studies. Thus, the genome-editing strategy described herein may be useful for in vivo investigations of the roles of transport-related genes in gentian plants.

Indexed as

CRISPR-Cas SystemsAnthocyaninsBiological TransportCloning, MolecularFlavonoidsFlowersGene EditingGenes, PlantGenetic Complementation TestGentianaGlutathione TransferaseHigh-Throughput Nucleotide SequencingPhenotypePlant LeavesPlant ProteinsAnthocyaninsFlavonoidsGlutathione TransferasePlant ProteinsAnthocyaninCRISPR/Cas9Flower pigmentationGenome editingGentianGST

Identifiers

PMID32762648
PMCPMC7409652
OpenAlexW3047086031

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.