Evidence map›Paper›PMID 32761902›Full record

ArticleEpilepsia2020

Accurate detection of spontaneous seizures using a generalized linear model with external validation.

Nicolas F Fumeaux, Senan Ebrahim, Brian F Coughlin, Adesh Kadambi, Aafreen Azmi, Jen X Xu, Maurice Abou Jaoude, Sunil B Nagaraj, Kyle E Thomson, Thomas G Newell and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Epilepsia, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 3 countries.

Nicolas F FumeauxDepartment of Neurology, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA.
Senan EbrahimDepartment of Neurology, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA.ORCID 0000-0003-3901-7160
Brian F CoughlinDepartment of Neurology, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA.
Adesh KadambiDepartment of Neurology, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA.
Aafreen AzmiDepartment of Neurology, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA.
Jen X XuDepartment of Neurology, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA.
Maurice Abou JaoudeDepartment of Neurology, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA.ORCID 0000-0001-9270-7043
Sunil B NagarajClinical Pharmacy and Pharmacology, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands.
Kyle E ThomsonDepartment of Pharmacology, University of Utah, Salt Lake City, UT, USA.ORCID 0000-0003-2345-4526
Thomas G NewellDepartment of Pharmacology, University of Utah, Salt Lake City, UT, USA.
Cameron S MetcalfDepartment of Pharmacology, University of Utah, Salt Lake City, UT, USA.ORCID 0000-0002-1510-0405
Karen S WilcoxDepartment of Pharmacology, University of Utah, Salt Lake City, UT, USA.
Eyal Y KimchiDepartment of Neurology, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA.
Marcio F D MoraesNucleo de Neurociencias, Universidade Federal de Minas Gerais, Brazil.ORCID 0000-0002-2034-1836
Sydney S CashDepartment of Neurology, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA.
Harvard University · USUniversity of Utah · USUniversidade Federal de Minas Gerais · BRUniversity Medical Center Groningen · NL

Funding

Medical Scientist Training ProgramT32GM007753 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WALENSKY, LOREN DAVID · 1985 to 2021
$50.0M
PHD TRAINING IN NEUROSCIENCET32MH020017 · NIMH · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI JOHN ASSAD · 1997 to 2026
$15.8M
Neurophysiology of Human Cortical EpilepsyR01NS062092 · NINDS · MASSACHUSETTS GENERAL HOSPITAL · PI CASH, SYDNEY S · 2010 to 2021
$4.7M
Seizure focus delineation using spontaneous and stimulus evoked EEG featuresK24NS088568 · NINDS · MASSACHUSETTS GENERAL HOSPITAL · PI CASH, SYDNEY S · 2015 to 2019
$923k
Determining optimal parameters for dynamic cholinergic modulation of associative learningK08MH116135 · NIMH · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI KIMCHI, EYAL YAACOV · 2018 to 2021
$783k
Determining the pathophysiology of delirium in the elderly through translational modelsR03AG050878 · NIA · MASSACHUSETTS GENERAL HOSPITAL · PI KIMCHI, EYAL YAACOV · 2015 to 2016
$261k
Seizure Prediction in a Rodent Model of Focal EpilepsyF31NS105161 · NINDS · HARVARD MEDICAL SCHOOL · PI EBRAHIM, SENAN · 2018 to 2018
$38k
Fondation BertarelliHarvard Medical Scientist Training ProgramNIA NIH HHS R03 AG050878NIDA NIH HHS HHSN271201600048CNIGMS NIH HHS T32 GM007753NIMH NIH HHS K08 MH116135NIMH NIH HHS T32 MH020017NINDS NIH HHS F31 NS105161NINDS NIH HHS K24 NS088568NINDS NIH HHS R01 NS062092Paul and Daisy Soros Fellowships for New Americans
6 · The paper itself

Abstract

objectiveSeizure detection is a major facet of electroencephalography (EEG) analysis in neurocritical care, epilepsy diagnosis and management, and the instantiation of novel therapies such as closed-loop stimulation or optogenetic control of seizures. It is also of increased importance in high-throughput, robust, and reproducible pre-clinical research. However, seizure detectors are not widely relied upon in either clinical or research settings due to limited validation. In this study, we create a high-performance seizure-detection approach, validated in multiple data sets, with the intention that such a system could be available to users for multiple purposes.

methodsWe introduce a generalized linear model trained on 141 EEG signal features for classification of seizures in continuous EEG for two data sets. In the first (Focal Epilepsy) data set consisting of 16 rats with focal epilepsy, we collected 1012 spontaneous seizures over 3 months of 24/7 recording. We trained a generalized linear model on the 141 features representing 20 feature classes, including univariate and multivariate, linear and nonlinear, time, and frequency domains. We tested performance on multiple hold-out test data sets. We then used the trained model in a second (Multifocal Epilepsy) data set consisting of 96 rats with 2883 spontaneous multifocal seizures.

resultsFrom the Focal Epilepsy data set, we built a pooled classifier with an Area Under the Receiver Operating Characteristic (AUROC) of 0.995 and leave-one-out classifiers with an AUROC of 0.962. We validated our method within the independently constructed Multifocal Epilepsy data set, resulting in a pooled AUROC of 0.963. We separately validated a model trained exclusively on the Focal Epilepsy data set and tested on the held-out Multifocal Epilepsy data set with an AUROC of 0.890. Latency to detection was under 5 seconds for over 80% of seizures and under 12 seconds for over 99% of seizures. SIGNIFICANCE: This method achieves the highest performance published for seizure detection on multiple independent data sets. This method of seizure detection can be applied to automated EEG analysis pipelines as well as closed loop interventional approaches, and can be especially useful in the setting of research using animals in which there is an increased need for standardization and high-throughput analysis of large number of seizures.

Indexed as

Machine LearningSignal Processing, Computer-AssistedAnimalsArea Under CurveDisease Models, AnimalElectrocorticographyElectroencephalographyEpilepsies, PartialExcitatory Amino Acid AgonistsKainic AcidLinear ModelsRatsReproducibility of ResultsROC CurveSeizuresExcitatory Amino Acid AgonistsKainic Acidfocal epilepsymachine learningmodel validationquantitative EEGseizure detection

Identifiers

PMID32761902
PMCPMC7953845
OpenAlexW3048227570

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.