Evidence map›Paper›PMID 32758716›Full record

ArticleVirology2020

Dynamic changes impact the plum pox virus population structure during leaf and bud development.

Yvette B Tamukong, Tamara D Collum, Andrew L Stone, Madhu Kappagantu, Diana J Sherman, Elizabeth E Rogers, Christopher Dardick, James N Culver

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Virology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Yvette B TamukongDepartment of Plant Science and Landscape Architecture, University of Maryland, College Park, MD, USA.
Tamara D CollumInstitute for Bioscience and Biotechnology Research, College Park, MD, USA; USDA, Agricultural Research Service, Foreign Disease-Weed Science Research Unit, Frederick, MD, USA.
Andrew L StoneUSDA, Agricultural Research Service, Foreign Disease-Weed Science Research Unit, Frederick, MD, USA.
Madhu KappagantuInstitute for Bioscience and Biotechnology Research, College Park, MD, USA.
Diana J ShermanUSDA, Agricultural Research Service, Foreign Disease-Weed Science Research Unit, Frederick, MD, USA.
Elizabeth E RogersUSDA, Agricultural Research Service, Foreign Disease-Weed Science Research Unit, Frederick, MD, USA.
Christopher DardickUSDA, Agricultural Research Service, Appalachian Fruit Research Station, Kearneysville, WV, USA.
James N CulverDepartment of Plant Science and Landscape Architecture, University of Maryland, College Park, MD, USA; Institute for Bioscience and Biotechnology Research, College Park, MD, USA. Electronic address: jculver@umd.edu.

Funding

Mechanisms of Virus Replication and Gene ExpressionT32AI051967 · NIAID · UNIV OF MARYLAND, COLLEGE PARK · PI SIMON, ANNE ELIZABETH · 2002 to 2013
$1.8M
NIAID NIH HHS T32 AI051967
6 · The paper itself

Abstract

Plum pox virus (PPV) is a worldwide threat to stone fruit production. Its woody perennial hosts provide a dynamic environment for virus evolution over multiple growing seasons. To investigate the impact seasonal host development plays in PPV population structure, next generation sequencing of ribosome associated viral genomes, termed translatome, was used to assess PPV variants derived from phloem or whole leaf tissues over a range of plum leaf and bud developmental stages. Results show that translatome PPV variants occur at proportionately higher levels in bud and newly developing leaf tissues that have low infection levels while more mature tissues with high infection levels display proportionately lower numbers of viral variants. Additional variant analysis identified distinct groups based on population frequency as well as sets of phloem and whole tissue specific variants. Combined, these results indicate PPV population dynamics are impacted by the tissue type and developmental stage of their host.

Indexed as

FruitGenome, ViralPhloemPlant DiseasesPlant LeavesPlum Pox VirusPrunus domesticaPhloemPopulation dynamicsTissue specificityVernalization

Identifiers

PMID32758716
PMCPMC7513809

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.