Evidence map›Paper›PMID 32758143›Full record

ArticleBMC plant biology2020

Effect of phosphorus supply on root traits of two Brassica oleracea L. genotypes.

Paula Pongrac, Hiram Castillo-Michel, Juan Reyes-Herrera, Robert D Hancock, Sina Fischer, Mitja Kelemen, Jacqueline A Thompson, Gladys Wright, Matevž Likar, Martin R Broadley and 3 more

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
3.2field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 27 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 5 countries.

Paula PongracEcological Science Group, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK. paula.pongrac@gmail.com.ORCID http://orcid.org/0000-0003-0721-7555
Hiram Castillo-MichelEuropean Synchrotron Radiation Facility, Grenoble, France.
Juan Reyes-HerreraEuropean Synchrotron Radiation Facility, Grenoble, France.
Robert D HancockCell and Molecular Sciences, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK.
Sina FischerFuture Food Beacon of Excellence and the School of Biosciences, University of Nottingham, Nottingham, LE12 5RD, UK.
Mitja KelemenJožef Stefan Institute, Jamova 39, SI-1000, Ljubljana, Slovenia.
Jacqueline A ThompsonEcological Science Group, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK.
Gladys WrightEcological Science Group, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK.
Matevž LikarBiotechnical Faculty, University of Ljubljana, Jamnikarjeva 101, SI-1000, Ljubljana, Slovenia.
Martin R BroadleyPlant and Crop Sciences Division, University of Nottingham, Loughborough, LE12 5RD, UK.
Primož VavpetičJožef Stefan Institute, Jamova 39, SI-1000, Ljubljana, Slovenia.
Primož PeliconJožef Stefan Institute, Jamova 39, SI-1000, Ljubljana, Slovenia.
Philip J WhiteEcological Science Group, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK.
James Hutton Institute · GBJožef Stefan Institute · SIEuropean Synchrotron Radiation Facility · FRUniversity of Nottingham · GBUniversity of Ljubljana · SI

Funding

Marie Curie Intra-European Fellowship 623305Mexican National Council for Science and Technology 177448Slovenian Research Agency J7-9398Slovenian Research Agency N7-0077Slovenian Research Agency P1-0112Slovenian Research Agency P1-0212
6 · The paper itself

Abstract

backgroundPhosphorus (P) deficiency limits crop production worldwide. Crops differ in their ability to acquire and utilise the P available. The aim of this study was to determine root traits (root exudates, root system architecture (RSA), tissue-specific allocation of P, and gene expression in roots) that (a) play a role in P-use efficiency and (b) contribute to large shoot zinc (Zn) concentration in Brassica oleracea.

resultsTwo B. oleracea accessions (var. sabellica C6, a kale, and var. italica F103, a broccoli) were grown in a hydroponic system or in a high-throughput-root phenotyping (HTRP) system where they received Low P (0.025 mM) or High P (0.25 mM) supply for 2 weeks. In hydroponics, root and shoot P and Zn concentrations were measured, root exudates were profiled using both Fourier-Transform-Infrared spectroscopy and gas-chromatography-mass spectrometry and previously published RNAseq data from roots was re-examined. In HTRP experiments, RSA (main and lateral root number and lateral root length) was assessed and the tissue-specific distribution of P was determined using micro-particle-induced-X-ray emission. The C6 accession had greater root and shoot biomass than the F103 accession, but the latter had a larger shoot P concentration than the C6 accession, regardless of the P supply in the hydroponic system. The F103 accession had a larger shoot Zn concentration than the C6 accession in the High P treatment. Although the F103 accession had a larger number of lateral roots, which were also longer than in the C6 accession, the C6 accession released a larger quantity and number of polar compounds than the F103 accession. A larger number of P-responsive genes were found in the Low P treatment in roots of the F103 accession than in roots of the C6 accession. Expression of genes linked with "phosphate starvation" was up-regulated, while those linked with iron homeostasis were down-regulated in the Low P treatment.

conclusionsThe results illustrate large within-species variability in root acclimatory responses to P supply in the composition of root exudates, RSA and gene expression, but not in P distribution in root cross sections, enabling P sufficiency in the two B. oleracea accessions studied.

Indexed as

BrassicaGene Expression Regulation, PlantGenotypeHydroponicsMetabolomePhosphorusPlant RootsPlant ShootsPhosphorusBroccoliGene expressionKalePhosphorus deficiencyPhosphorus use efficiencyRNAseqRoot exudatesSpatial distribution of phosphorus

Identifiers

PMID32758143
PMCPMC7404929
OpenAlexW3046952519

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.