Evidence map›Paper›PMID 32757260›Full record

ArticleMolecular genetics & genomic medicine2020

Two rare PROX1 variants in patients with lymphedema.

Maurizio Ricci, Bruno Amato, Shila Barati, Rita Compagna, Dominika Veselenyiova, Sercan Kenanoglu, Liborio Stuppia, Tommaso Beccari, Mirko Baglivo, Danjela Kurti and 6 more

Open access · goldAbstract readCase Reports
In one paragraph

Article in Molecular genetics & genomic medicine, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.2field-weighted citation impact, top 48% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 6 citations in OpenAlex.

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  7. Two rare PROX1 variants in patients with lymphedema.Molecular genetics & genomic medicine · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 10 institutions in 5 countries.

Maurizio RicciDivision of Rehabilitation Medicine, Azienda Ospedaliero-Universitaria, Ospedali Riuniti di Ancona, Italy.
Bruno AmatoDepartment of Clinical Medicine and Surgery, University Federico II of Naples, Naples, Italy.
Shila BaratiMAGI Euregio, Bolzano, Italy.
Rita CompagnaDepartment of Public Health, University of Naples Federico II, Naples, Italy.
Dominika VeselenyiovaMAGI Euregio, Bolzano, Italy.
Sercan KenanogluMAGI Euregio, Bolzano, Italy.
Liborio StuppiaAging and Translational Medicine Research Center (CeSI-MeT), University "G. d'Annunzio", Chieti-Pescara, Italy.
Tommaso BeccariDepartment of Pharmaceutical Sciences, University of Perugia, Perugia, Italy.
Mirko BaglivoMAGI Euregio, Bolzano, Italy.ORCID 0000-0002-3924-3195
Danjela KurtiMAGI Euregio, Bolzano, Italy.
Juraj KrajcovicDepartment of Biology, Faculty of Natural Sciences, University of Ss. Cyril and Methodius In Trnava, Trnava, Slovakia.
Roberta SerraniDivision of Rehabilitation Medicine, Azienda Ospedaliero-Universitaria, Ospedali Riuniti di Ancona, Italy.
Munis DundarDepartment of Medical Genetics, Faculty of Medicine, Erciyes University, Kayseri, Turkey.
Syed H BashaInnovative Informatica Technologies, Telangana, India.
Pietro ChiurazziIstituto di Medicina Genomica, Università Cattolica del Sacro Cuore, Rome, Italy.
Matteo BertelliMAGI Euregio, Bolzano, Italy.
Erciyes University · TROspedali Riuniti di Ancona · ITUniversity of Naples Federico II · ITUniversity of Ss. Cyril and Methodius in Trnava · SKAlbanian University · ALCenter for Neuroscience and Cognitive Systems · ITCentro Tecnológico de Investigación, Desarrollo e Innovación en tecnologías de la Información y las Comunicaciones (TIC) · ESUniversità Cattolica del Sacro Cuore · ITUniversity of Chieti-Pescara · ITUniversity of Perugia · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe PROX1 gene is specifically expressed in a subpopulation of endothelial cells that, by budding and sprouting, give rise to the lymphatic system. It also plays a critical role in neurogenesis and during development of many organs, such as the eye lens, liver, and pancreas.

methodsWe used next-generation sequencing (NGS) to sequence the DNA of a cohort of 246 Italian patients with lymphatic malformations. We first investigated 29 known disease-causing genes: 235 of 246 patients tested negative and were then retested for a group of candidate genes, including PROX1, selected from a database of mouse models. The aim of the study was to define these patients' genotypes and explore the role of the candidate gene PROX1 in lymphedema.

resultsTwo of 235 probands were found to carry rare heterozygous missense variants in PROX1. In silico analysis of these variants-p.(Leu590His) and p.(Gly106Asp)-indicates that the overall protein structure was altered by changes in interactions between nearby residues, leading to functional protein defects.

conclusionsOur results suggest that PROX1 is a new candidate gene for predisposition to lymphedema.

Indexed as

AdultAgedFemaleHeterozygoteHomeodomain ProteinsHumansLymphedemaMaleMutation, MissensePedigreePhenotypeProspero-Related Homeobox 1 ProteinProtein DomainsTumor Suppressor ProteinsHomeodomain ProteinsProspero-Related Homeobox 1 ProteinTumor Suppressor Proteinsgenetic diagnosislymphedemanext-generation sequencing (NGS)PROX1

Identifiers

PMID32757260
PMCPMC7549596
OpenAlexW3047573361

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.