Evidence map›Paper›PMID 32755564›Full record

ArticleMolecular therapy : the journal of the American Society of Gene Therapy2020

A Distinct Transcriptional Program in Human CAR T Cells Bearing the 4-1BB Signaling Domain Revealed by scRNA-Seq.

Angela C Boroughs, Rebecca C Larson, Nemanja D Marjanovic, Kirk Gosik, Ana P Castano, Caroline B M Porter, Selena J Lorrey, Orr Ashenberg, Livnat Jerby, Matan Hofree and 10 more

Open access · hybridAbstract read
In one paragraph

Article in Molecular therapy : the journal of the American Society of Gene Therapy, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 74 papers.

0numbers the graph read from it
0cells of the map it votes in
74citing papers in PubMed
5.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

74 citing papers in PubMed, 107 citations in OpenAlex.

  1. Article
  2. Review
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  6. Article
  7. CD147 regulates CD8iScience · 2026
    Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Review
  13. Review
  14. Optimal pairing of binder and co-stimulatory domains improves dual CART cell efficacy.Molecular therapy : the journal of the American Society of Gene Therapy · 2025
    Article
  15. Review
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article

14 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 4 institutions in 1 country.

Angela C BoroughsCellular Immunotherapy Program and Cancer Center, Massachusetts General Hospital, Charlestown, MA 02129, USA; Harvard Medical School, Boston, MA 02115, USA.
Rebecca C LarsonCellular Immunotherapy Program and Cancer Center, Massachusetts General Hospital, Charlestown, MA 02129, USA; Harvard Medical School, Boston, MA 02115, USA.
Nemanja D MarjanovicKlarman Cell Observatory, Broad Institute of MIT and Harvard, Cambridge, MA 02139, USA.
Kirk GosikKlarman Cell Observatory, Broad Institute of MIT and Harvard, Cambridge, MA 02139, USA.
Ana P CastanoCellular Immunotherapy Program and Cancer Center, Massachusetts General Hospital, Charlestown, MA 02129, USA.
Caroline B M PorterKlarman Cell Observatory, Broad Institute of MIT and Harvard, Cambridge, MA 02139, USA.
Selena J LorreyCellular Immunotherapy Program and Cancer Center, Massachusetts General Hospital, Charlestown, MA 02129, USA.
Orr AshenbergKlarman Cell Observatory, Broad Institute of MIT and Harvard, Cambridge, MA 02139, USA.
Livnat JerbyKlarman Cell Observatory, Broad Institute of MIT and Harvard, Cambridge, MA 02139, USA.
Matan HofreeKlarman Cell Observatory, Broad Institute of MIT and Harvard, Cambridge, MA 02139, USA.
Gabriela Smith-RosarioKlarman Cell Observatory, Broad Institute of MIT and Harvard, Cambridge, MA 02139, USA.
Robert MorrisHoward Hughes Medical Institute, Koch Institute of Integrative Cancer Research, Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02140, USA.
Joshua GouldKlarman Cell Observatory, Broad Institute of MIT and Harvard, Cambridge, MA 02139, USA.
Lauren S RileyCellular Immunotherapy Program and Cancer Center, Massachusetts General Hospital, Charlestown, MA 02129, USA.
Trisha R BergerCellular Immunotherapy Program and Cancer Center, Massachusetts General Hospital, Charlestown, MA 02129, USA.
Samantha J RiesenfeldKlarman Cell Observatory, Broad Institute of MIT and Harvard, Cambridge, MA 02139, USA.
Orit Rozenblatt-RosenKlarman Cell Observatory, Broad Institute of MIT and Harvard, Cambridge, MA 02139, USA.
Bryan D ChoiCellular Immunotherapy Program and Cancer Center, Massachusetts General Hospital, Charlestown, MA 02129, USA.
Aviv RegevKlarman Cell Observatory, Broad Institute of MIT and Harvard, Cambridge, MA 02139, USA; Howard Hughes Medical Institute, Koch Institute of Integrative Cancer Research, Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02140, USA. Electronic address: aregev@broadinstitute.org.
Marcela V MausCellular Immunotherapy Program and Cancer Center, Massachusetts General Hospital, Charlestown, MA 02129, USA; Harvard Medical School, Boston, MA 02115, USA; Klarman Cell Observatory, Broad Institute of MIT and Harvard, Cambridge, MA 02139, USA; Department of Medicine, Massachusetts General Hospital, Boston, MA 02114, USA. Electronic address: mvmaus@mgh.harvard.edu.
Broad Institute · USMassachusetts General Hospital · USHarvard University · USHoward Hughes Medical Institute · US

Funding

TRAINING IN TRANSPLANTATION BIOLOGYT32AI007529 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI MADSEN, JOREN C · 1998 to 2024
$6.4M
Overcoming tumor heterogeneity in glioblastoma with multi-targeted CAR T cells secreting bispecific antibodiesR01CA238268 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI Marcela Valderrama Maus · 2019 to 2026
$4.0M
Training Program in Immunological Tolerance and AutoimmunityT32AI118692 · NIAID · HARVARD MEDICAL SCHOOL · PI PILLAI, SHIV SUBRAMANIAM · 2015 to 2019
$948k
Designer antigen receptors to re-direct T cells to the NY-ESO-1 tumor antigenK08CA166039 · NCI · UNIVERSITY OF PENNSYLVANIA · PI MAUS, MARCELA VALDERRAMA · 2012 to 2016
$747k
NCI NIH HHS K08 CA166039NCI NIH HHS R01 CA238268NIAID NIH HHS T32 AI007529NIAID NIH HHS T32 AI118692
6 · The paper itself

Abstract

T cells engineered to express chimeric antigen receptors (CARs) targeting CD19 have produced impressive outcomes for the treatment of B cell malignancies, but different products vary in kinetics, persistence, and toxicity profiles based on the co-stimulatory domains included in the CAR. In this study, we performed transcriptional profiling of bulk CAR T cell populations and single cells to characterize the transcriptional states of human T cells transduced with CD3ζ, 4-1BB-CD3ζ (BBζ), or CD28-CD3ζ (28ζ) co-stimulatory domains at rest and after activation by triggering their CAR or their endogenous T cell receptor (TCR). We identified a transcriptional signature common across CARs with the CD3ζ signaling domain, as well as a distinct program associated with the 4-1BB co-stimulatory domain at rest and after activation. CAR T cells bearing BBζ had increased expression of human leukocyte antigen (HLA) class II genes, ENPP2, and interleukin (IL)-21 axis genes, and decreased PD1 compared to 28ζ CAR T cells. Similar to previous studies, we also found BBζ CAR CD8 T cells to be enriched in a central memory cell phenotype and fatty acid metabolism genes. Our data uncovered transcriptional signatures related to costimulatory domains and demonstrated that signaling domains included in CARs uniquely shape the transcriptional programs of T cells.

Indexed as

Transcriptome4-1BB LigandCell EngineeringHEK293 CellsHumansK562 CellsProtein DomainsReceptors, Chimeric AntigenRNA-SeqRNA, Small CytoplasmicSignal TransductionSingle-Cell AnalysisT-LymphocytesTransduction, Genetic4-1BB LigandReceptors, Chimeric AntigenRNA, Small Cytoplasmicadoptive cellular therapyCAR T cellssingle-cell RNA sequencingT cell activationtranscriptional profiling

Identifiers

PMID32755564
PMCPMC7704462
OpenAlexW3044609915

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.