Evidence map›Paper›PMID 32753745›Full record

ArticleScientific reports2020

Differential proteomics study of postharvest Volvariella volvacea during storage at 4 °C.

Lei Zha, Mingjie Chen, Changxia Yu, Qian Guo, Xu Zhao, Zhengpeng Li, Yan Zhao, Chuanhua Li, Huanling Yang

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.4field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Exogenous MnSOJournal of fungi (Basel, Switzerland) · 2024
    Article
  4. Article
  5. Comparative Proteomics Study on the Postharvest Senescence ofJournal of fungi (Basel, Switzerland) · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Lei Zha *Institute of Edible Fungi, Shanghai Academy of Agricultural Sciences, Shanghai, 201403, China.
Mingjie Chen *Institute of Edible Fungi, Shanghai Academy of Agricultural Sciences, Shanghai, 201403, China.
Changxia YuInstitute of Edible Fungi, Shanghai Academy of Agricultural Sciences, Shanghai, 201403, China.
Qian GuoInstitute of Edible Fungi, Shanghai Academy of Agricultural Sciences, Shanghai, 201403, China.
Xu ZhaoInstitute of Edible Fungi, Shanghai Academy of Agricultural Sciences, Shanghai, 201403, China.ORCID http://orcid.org/0000-0002-7174-9700
Zhengpeng LiInstitute of Edible Fungi, Shanghai Academy of Agricultural Sciences, Shanghai, 201403, China.
Yan ZhaoInstitute of Edible Fungi, Shanghai Academy of Agricultural Sciences, Shanghai, 201403, China. jiandan289@126.com.
Chuanhua LiInstitute of Edible Fungi, Shanghai Academy of Agricultural Sciences, Shanghai, 201403, China.
Huanling YangInstitute of Edible Fungi, Shanghai Academy of Agricultural Sciences, Shanghai, 201403, China.
Shanghai Academy of Agricultural Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The postharvest storage of Volvariella volvacea is an important factor limiting the industry development. Low-temperature storage is the traditional storage method used for most edible fungi, but V. volvacea undergoes autolysis at low temperature. To understand the molecular mechanism underlying the low-temperature autolysis of V. volvacea after harvesting, fruiting bodies of V. volvacea strain V23 were stored at 4 °C. Based on our previous study, in which the changes of morphological and physiological indexes during storage for 0, 6, 12, 24, 30, 36, 48 and 60 h were measured; four time points, namely, 0, 12, 24 and 60 h, were selected for this differential proteomics study. The proteomic changes in the postharvest storage samples were studied by isobaric tags for relative and absolute quantification-coupled two-dimensional liquid chromatography-tandem mass spectrometry (2D LC-MS/MS). A total of 2,063 proteins were identified, and 192 differentially expressed proteins (DEPs), including 24 up-regulated proteins and 168 down-regulated proteins, were detected after 12 h of storage. After 24 h of storage, 234 DEPs, including 48 up-regulated and 186 down-regulated proteins, were observed, and after 60 h, 415 DEPs, including 65 up-regulated proteins and 350 down-regulated proteins, were observed. An in-depth data analysis showed that the DEPs participated in various cellular processes, particularly metabolic processes. In this study, we combined Gene Ontology and Kyoto Encyclopedia of Genes and Genomes pathway analyses, and the results focused on oxidative phosphorylation and ubiquitin mediated proteolysis pathways. In addition, sdh2, uba1 and ubc1 was confirmed by quantitative real-time polymerase chain reaction, and the results showed that the expression of these genes were consistent with their protein level. Based on the literature and our results, it is speculated that the identified DEPs, such as ATP1, SDH2, COR1, UBA1, COX4, UBC1 and SKP1 play a key role in the low-temperature autolysis of V. volvacea.

Indexed as

Cold TemperaturePreservation, BiologicalProteomicsAgaricalesFruiting Bodies, FungalFungal ProteinsFungal Proteins

Identifiers

PMID32753745
PMCPMC7403728
OpenAlexW3047267247

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.