Evidence map›Paper›PMID 32753684›Full record

ArticleCommunications biology2020

Genomic analyses of a livestock pest, the New World screwworm, find potential targets for genetic control programs.

Maxwell J Scott, Joshua B Benoit, Rebecca J Davis, Samuel T Bailey, Virag Varga, Ellen O Martinson, Paul V Hickner, Zainulabeuddin Syed, Gisele A Cardoso, Tatiana T Torres and 7 more

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 52 citations in OpenAlex.

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  14. A chromosomal-scale reference genome of the New World Screwworm, Cochliomyia hominivorax.DNA research : an international journal for rapid publication of reports on genes and genomes · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 8 institutions in 2 countries.

Maxwell J ScottDepartment of Entomology and Plant Pathology, North Carolina State University, Campus Box 7613, Raleigh, NC, 27695-7613, USA. mjscott3@ncsu.edu.ORCID http://orcid.org/0000-0001-6536-4735
Joshua B BenoitDepartment of Biological Sciences, University of Cincinnati, McMicken School of Arts and Sciences, Cincinnati, OH, 45221, USA.
Rebecca J DavisDepartment of Entomology and Plant Pathology, North Carolina State University, Campus Box 7613, Raleigh, NC, 27695-7613, USA.
Samuel T BaileyDepartment of Biological Sciences, University of Cincinnati, McMicken School of Arts and Sciences, Cincinnati, OH, 45221, USA.
Virag VargaDepartment of Biological Sciences, University of Cincinnati, McMicken School of Arts and Sciences, Cincinnati, OH, 45221, USA.ORCID http://orcid.org/0000-0001-6929-9379
Ellen O MartinsonDepartment of Biology, University of New Mexico, Albuquerque, NM, 87131, USA.ORCID http://orcid.org/0000-0001-9757-6679
Paul V HicknerDepartment of Entomology, University of Kentucky, Lexington, KY, 40546, USA.
Zainulabeuddin SyedDepartment of Entomology, University of Kentucky, Lexington, KY, 40546, USA.
Gisele A CardosoDepartment of Genetics and Evolutionary Biology, University of São Paulo, São Paulo, Brazil.
Tatiana T TorresDepartment of Genetics and Evolutionary Biology, University of São Paulo, São Paulo, Brazil.ORCID http://orcid.org/0000-0002-4286-3504
Matthew T WeirauchCenter for Autoimmune Genomics and Etiology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, 45229, USA.ORCID http://orcid.org/0000-0001-7977-9122
Elizabeth H SchollBioinformatics Research Center, North Carolina State University, Campus Box 7566, Raleigh, NC, 27695-7566, USA.
Adam M PhillippyGenome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, Bethesda, MD, 20892, USA.ORCID http://orcid.org/0000-0003-2983-8934
Agustin SagelUSDA-ARS, Screwworm Research Unit, Pacora, Panama.
Mario VasquezUSDA-ARS, Screwworm Research Unit, Pacora, Panama.
Gladys QuinteroUSDA-ARS, Screwworm Research Unit, Pacora, Panama.
Steven R SkodaUSDA-ARS, Tick and Biting Fly Research Unit, Knipling-Bushland Livestock Insects Research Laboratory, 2700 Fredericksburg Rd., Kerrville, TX, 78028, USA.
North Carolina State University · USUniversity of Cincinnati · USUniversidade de São Paulo · BRUniversity of Kentucky · USCincinnati Children's Hospital Medical Center · USKnipling-Bushland U.S. Livestock Insects Research Laboratory · USNational Human Genome Research Institute · USUniversity of New Mexico · US

Funding

Single-molecule sequence assembly and analysisZIAHG200398 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI PHILLIPPY, ADAM · 2016 to 2025
$15.9M
6 · The paper itself

Abstract

The New World Screwworm fly, Cochliomyia hominivorax, is a major pest of livestock in South America and Caribbean. However, few genomic resources have been available for this species. A genome of 534 Mb was assembled from long read PacBio DNA sequencing of DNA from a highly inbred strain. Analysis of molecular evolution identified 40 genes that are likely under positive selection. Developmental RNA-seq analysis identified specific genes associated with each stage. We identify and analyze the expression of genes that are likely important for host-seeking behavior (chemosensory), development of larvae in open wounds in warm-blooded animals (heat shock protein, immune response) and for building transgenic strains for genetic control programs including gene drive (sex determination, germline). This study will underpin future experiments aimed at understanding the parasitic lifestyle of the screwworm fly and greatly facilitate future development of strains for efficient systems for genetic control of screwworm.

Indexed as

Evolution, MolecularAnimalsCalliphoridaeGene Expression RegulationGenomicsHost-Parasite InteractionsLarvaLivestockPest Control, BiologicalRNA-SeqScrew Worm InfectionSouth America

Identifiers

PMID32753684
PMCPMC7403345
OpenAlexW3047409371

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.