Evidence map›Paper›PMID 32751845›Full record

ArticleInternational journal of molecular sciences2020

A Structural Model for Bax∆2-Mediated Activation of Caspase 8-Dependent Apoptosis.

Bing Xie, Qi Yao, Jialing Xiang, David D L Minh

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 46% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Bing XieDepartment of Chemistry, Illinois Institute of Technology, Chicago, IL 60616, USA.
Qi YaoDepartment of Biology, Illinois Institute of Technology, Chicago, IL 60616, USA.
Jialing XiangDepartment of Biology, Illinois Institute of Technology, Chicago, IL 60616, USA.
David D L MinhDepartment of Chemistry, Illinois Institute of Technology, Chicago, IL 60616, USA.ORCID 0000-0002-4802-2618
Illinois Institute of Technology · US

Funding

Entropy for End-Point and FFT-Based Binding Free Energy CalculationsR01GM127712 · NIGMS · ILLINOIS INSTITUTE OF TECHNOLOGY · PI MINH, DAVID DO LE · 2018 to 2021
$1.3M
Mechanism and Regulation of Baxdelta2 in Colorectal CancerR15CA195526 · NCI · ILLINOIS INSTITUTE OF TECHNOLOGY · PI XIANG, JIALING · 2016 to 2016
$458k
NIH HHS R01GM127712NIH HHS R15CA195526
6 · The paper itself

Abstract

Bax∆2 is a pro-apoptotic anti-tumor protein in the Bax family. While most of the Bax family causes cell death by targeting mitochondria, Bax∆2 forms cytosolic aggregates and activates caspase 8-dependent cell death. We previously showed that the Bax∆2 helix α9 is critical for caspase 8 recruitment. However, the interaction between these two proteins at the structural level is unknown. In this in silico study, we performed molecular dynamics (MD) simulations and protein-protein docking on Bax∆2 variants. The results suggest that the Bax∆2 variants have different stable states. Mutating the Baxα mitochondria-targeting signal [L26P/L27P] appears to introduce a kink into helix α1. Protein-protein docking suggests that helices α9 of both wild-type Bax∆2 and Bax∆2 caspase 8 binding-deficient mutant [L164P] can fit in the same caspase 8 binding site, but the mutant is unable to fit as well as wild-type Bax∆2. Together, these data point to a structural basis for explaining Bax∆2 function in caspase 8-dependent cell death.

Indexed as

bcl-2-Associated X ProteinModels, StructuralApoptosisBinding SitesCaspase 8HumansProtein BindingProtein Structure, TertiaryBAX protein, humanbcl-2-Associated X ProteinCASP8 protein, humanCaspase 8apoptosisBaxcaspasecell deathcomputational biologyhomology modelingmolecular dynamics (MD) simulationprotein docking

Identifiers

PMID32751845
PMCPMC7432750
OpenAlexW3046769486

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.