Evidence map›Paper›PMID 32750100›Full record

ArticlePloS one2020

aTBP: A versatile tool for fish genotyping.

Silvia Gianì, Silvia Silletti, Floriana Gavazzi, Laura Morello, Giacomo Spinsanti, Katia Parati, Diego Breviario

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.2field-weighted citation impact, top 50% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 2 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Silvia GianìDepartment Scienze Bioagroalimentari, Istituto Biologia e Biotecnologia Agraria, National Research Council, Milano, Italy.
Silvia SillettiDepartment Scienze Bioagroalimentari, Istituto Biologia e Biotecnologia Agraria, National Research Council, Milano, Italy.
Floriana GavazziDepartment Scienze Bioagroalimentari, Istituto Biologia e Biotecnologia Agraria, National Research Council, Milano, Italy.
Laura MorelloDepartment Scienze Bioagroalimentari, Istituto Biologia e Biotecnologia Agraria, National Research Council, Milano, Italy.
Giacomo SpinsantiDepartment of Life Sciences, University of Siena, Siena, Italy.
Katia ParatiIstituto Sperimentale Italiano Lazzaro Spallanzani, Rivolta d'Adda (CR), Italy.
Diego BreviarioDepartment Scienze Bioagroalimentari, Istituto Biologia e Biotecnologia Agraria, National Research Council, Milano, Italy.ORCID 0000-0002-3062-7598
Istituto di Biologia e Biotecnologia Agraria · ITIstituto Sperimentale Italiano Lazzaro Spallanzani · ITUniversity of Siena · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Animal Tubulin-Based-Polymorphism (aTBP), an intron length polymorphism method recently developed for vertebrate genotyping, has been successfully applied to the identification of several fish species. Here, we report data that demonstrate the ability of the aTBP method to assign a specific profile to fish species, each characterized by the presence of commonly shared amplicons together with additional intraspecific polymorphisms. Within each aTBP profile, some fragments are also recognized that can be attributed to taxonomic ranks higher than species, e.g. genus and family. Versatility of application across different taxonomic ranks combined with the presence of a significant number of DNA polymorphisms, makes the aTBP method an additional and useful tool for fish genotyping, suitable for different purposes such as species authentication, parental recognition and detection of allele variations in response to environmental changes.

Indexed as

Polymorphism, GeneticAnimalsFishesFish ProteinsGenotyping TechniquesTubulinFish ProteinsTubulin

Identifiers

PMID32750100
PMCPMC7402489
OpenAlexW3047572280

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.