Evidence map›Paper›PMID 32750053›Full record

ArticlePloS one2020

Molecular detection of multidrug resistance pattern and associated gene mutations in M. tuberculosis isolates from newly diagnosed pulmonary tuberculosis patients in Addis Ababa, Ethiopia.

Melaku Tilahun, Ezra Shimelis, Teklu Wogayehu, Gebeyehu Assefa, Getachew Wondimagegn, Alemayehu Mekonnen, Tsegaye Hailu, Kidist Bobosha, Abraham Aseffa

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
0.2field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it, 13 citations in OpenAlex.

  1. Pooled it
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  8. Frequency of rpoB, katG, and inhA Gene Polymorphisms Associated with Multidrug-ResistantInterdisciplinary perspectives on infectious diseases · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Melaku TilahunArmauer Hansen Research Institute (AHRI), Addis Ababa, Ethiopia.ORCID 0000-0002-3101-3926
Ezra ShimelisArmauer Hansen Research Institute (AHRI), Addis Ababa, Ethiopia.
Teklu WogayehuDepartment of Biology, Arba Minch University (AMU), College of Natural Sciences, Arba Minch, Ethiopia.
Gebeyehu AssefaArmauer Hansen Research Institute (AHRI), Addis Ababa, Ethiopia.
Getachew WondimagegnKNCV Tuberculosis Foundation, Addis Ababa, Ethiopia.
Alemayehu MekonnenEthiopian Public Health Association, Addis Ababa, Ethiopia.
Tsegaye HailuArmauer Hansen Research Institute (AHRI), Addis Ababa, Ethiopia.
Kidist BoboshaArmauer Hansen Research Institute (AHRI), Addis Ababa, Ethiopia.
Abraham AseffaArmauer Hansen Research Institute (AHRI), Addis Ababa, Ethiopia.
Armauer Hansen Research Institute · ETArba Minch University · ETEthiopian Public Health Association · ET

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

introductionMulti-drug resistance is a major challenge in the control of tuberculosis. Despite newer modalities for diagnosis and treatment, people are still suffering from this disease. Understanding the common gene mutations conferring rifampicin and isoniazid resistance is crucial for the implementation of effective molecular tools at local and national levels. Hence, this study aimed to evaluate the molecular detection of rifampicin and isoniazid-resistant gene mutations in M.tuberculosis isolates in Addis Ababa, Ethiopia.

methodHealth Center-based cross-sectional study was conducted between January and September 2017 in Addis Ababa, Ethiopia. The collected sputum samples were processed for mycobacterial isolation and Region of difference 9 based polymerase chain reaction for species identification. To characterize the rifampicin and isoniazid-resistant M. tuberculosis isolates, a molecular genetic assay (GenoType MTBDRplus) was used; the assay is based on DNA-STRIP technology.

resultCulture positivity was confirmed in 82.6% (190/230) of smear-positive newly diagnosed pulmonary tuberculosis cases enrolled in the study. From 190 isolates 93.2% were sensitive for both rifampicin and isoniazid, and 6.8% of the isolates were resistant to at least one of the tested anti-TB drugs. Gene mutations were observed in all studied multidrug resistance-associated gene loci (rpoB, katG, and inhA). Two isolates exhibited heteroresistance, a mutated, as well as wild type sequences, were detected in the respective strains. MDR-TB case was observed in 1.1% (2/190) of the cases. All the MDR-TB cases were positive for HIV and found to have a history of prior hospital admission.

conclusionIn our finding a relatively high prevalence of any drug resistance was observed and the overall prevalence of multidrug-resistant tuberculosis was 1.1%.The majority of drug-resistant isolates demonstrated common mutations. Heteroresistant strains were detected, signaling the existence of an M.tuberculosis population with variable responses to anti-tuberculosis drugs or of mixed infections.

Indexed as

AdolescentAdultAntitubercular AgentsCross-Sectional StudiesDNA, BacterialDNA Mutational AnalysisDrug Resistance, Multiple, BacterialEthiopiaFemaleGenes, BacterialGenetic LociHumansIsoniazidMaleMicrobial Sensitivity TestsMiddle AgedAntitubercular AgentsDNA, BacterialIsoniazidRifampin

Identifiers

PMID32750053
PMCPMC7402498
OpenAlexW3047425893

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.