Evidence map›Paper›PMID 32749405›Full record

ArticlePhysical chemistry chemical physics : PCCP2020

Extending the vibrational lifetime of azides with heavy atoms.

Farzaneh Chalyavi, Andrew J Schmitz, Natalie R Fetto, Matthew J Tucker, Scott H Brewer, Edward E Fenlon

Open access · greenAbstract read
In one paragraph

Article in Physical chemistry chemical physics : PCCP, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.5field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Versatile Vibrational Energy Sensors for Proteins.Angewandte Chemie (International ed. in English) · 2022
    Article
  7. Protein Dynamics by Two-Dimensional Infrared Spectroscopy.Annual review of analytical chemistry (Palo Alto, Calif.) · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Farzaneh ChalyaviDepartment of Chemistry, University of Wisconsin-Madison, Madison, WI 53706, USA.
Andrew J SchmitzDepartment of Chemistry, University of Nevada at Reno, Reno, NV 89557, USA. mtucker@unr.edu.
Natalie R FettoDepartment of Chemistry, University of Nevada at Reno, Reno, NV 89557, USA. mtucker@unr.edu.
Matthew J TuckerDepartment of Chemistry, University of Nevada at Reno, Reno, NV 89557, USA. mtucker@unr.edu.ORCID http://orcid.org/0000-0001-9724-4455
Scott H BrewerDepartment of Chemistry, Franklin & Marshall College, Lancaster, PA 17604, USA. sbrewer@fandm.edu, efenlon@fandm.edu.ORCID http://orcid.org/0000-0002-0287-2836
Edward E FenlonDepartment of Chemistry, Franklin & Marshall College, Lancaster, PA 17604, USA. sbrewer@fandm.edu, efenlon@fandm.edu.
University of Nevada, Reno · USFranklin & Marshall College · USUniversity of Wisconsin–Madison · US

Funding

Use of Vibrational Reporters to Measure Dynamics and Distances in RNA and ProteinsR15GM093330 · NIGMS · FRANKLIN AND MARSHALL COLLEGE · PI BREWER, SCOTT H, FENLON, EDWARD EMMETT · 2010 to 2024
$1.3M
Developing Infrared 'FRET' Analogs to Capture Molecular Snapshots through Non-equilibrium 2D IR Spectroscopy of Recognition and Self-Assembly in Biologically Relevant SystemsR15GM124597 · NIGMS · UNIVERSITY OF NEVADA RENO · PI TUCKER, MATTHEW J · 2017 to 2018
$396k
NIGMS NIH HHS R15 GM093330NIGMS NIH HHS R15 GM124597
6 · The paper itself

Abstract

The development of novel vibrational reporters (VRs), aka infrared (IR) probes, to study local environments and dynamic processes in biomolecules and materials continues to be an important area of research. Azides are important VRs because of their small size and large transition dipole strengths, however, their relatively short vibrational lifetimes (<2 ps) have limited their full potential. Herein we report that the vibrational lifetimes of azides can be increased by attaching them to heavy atoms and by using heavy 15N isotopes. Three group 14 atom triphenyl azides (Ph3CN3, Ph3SiN3, Ph3SnN3), and their triple-15N isotopomers, were synthesized in good yields. Tributyltin azide and its heavy isotopomer (Bu3Sn15N3) were also prepared to probe the effect of molecular scaffolding. The extinction coefficients for the natural abundance azides were determined, ranging from 900 to 1500 M-1 cm-1. The vibrational lifetimes of all azides were measured by pump-probe IR spectroscopy and each showed a major component with a short-to-moderate vibrational lifetime and a minor component with a much longer vibrational lifetime. Based on these results, the lifetime, aka the observation window, of an azide reporter can be extended from ∼2 ps to as long as ∼300 ps by a combination of isotopic labeling and heavy atom effect. 2D IR measurements of these compounds further confirmed the ability to observe these azide transitions at much longer timescales showing their utility to capture dynamic processes from tens to hundreds of picoseconds.

Identifiers

PMID32749405
PMCPMC8276756
OpenAlexW3047098341

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.