Evidence map›Paper›PMID 32748548›Full record

ArticleMolecular genetics & genomic medicine2020

Rare deleterious variants of NOTCH1, GATA4, SMAD6, and ROBO4 are enriched in BAV with early onset complications but not in BAV with heritable thoracic aortic disease.

Fadi I Musfee, Dongchuan Guo, Amélie C Pinard, Ellen M Hostetler, Elizabeth E Blue, Deborah A Nickerson, University of Washington Center for Mendelian Genomics (UW-CMG), Michael J Bamshad, Dianna M Milewicz, Siddharth K Prakash

Open access · goldAbstract read
In one paragraph

Article in Molecular genetics & genomic medicine, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
2.3field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 26 citations in OpenAlex.

  1. Pooled it
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  3. Article
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  7. Valvulopathies and Genetics: Where are We?Reviews in cardiovascular medicine · 2024
    Review
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  16. New Concepts in the Development and Malformation of the Arterial Valves.Journal of cardiovascular development and disease · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Fadi I MusfeeDepartment of Epidemiology, School of Public Health, University of Texas Health Science Center at Houston, Houston, TX, USA.ORCID 0000-0001-8210-3772
Dongchuan GuoDepartment of Internal Medicine, McGovern Medical School, University of Texas Health Science Center at Houston, Houston, TX, USA.
Amélie C PinardDepartment of Internal Medicine, McGovern Medical School, University of Texas Health Science Center at Houston, Houston, TX, USA.ORCID 0000-0003-1882-5740
Ellen M HostetlerDepartment of Internal Medicine, McGovern Medical School, University of Texas Health Science Center at Houston, Houston, TX, USA.
Elizabeth E BlueDepartment of Medicine, University of Washington School of Medicine, Seattle, WA, USA.
Deborah A NickersonGenome Sciences, University of Washington School of Medicine, Seattle, WA, USA.
University of Washington Center for Mendelian Genomics (UW-CMG)
Michael J BamshadGenome Sciences, University of Washington School of Medicine, Seattle, WA, USA.
Dianna M MilewiczDepartment of Internal Medicine, McGovern Medical School, University of Texas Health Science Center at Houston, Houston, TX, USA.
Siddharth K PrakashDepartment of Internal Medicine, McGovern Medical School, University of Texas Health Science Center at Houston, Houston, TX, USA.ORCID 0000-0001-6341-9624
The University of Texas Health Science Center · USUniversity of Washington · USThe University of Texas Health Science Center at Houston · US

Funding

UW Center for Mendelian GenomicsUM1HG006493 · NHGRI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, LEAL, SUZANNE M · 2016 to 2020
$15.3M
Genetic Predisposition To Thoracic Aortic Aneurysms/DissectionsR01HL109942 · NHLBI · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI MILEWICZ, DIANNA M · 2012 to 2023
$7.5M
NHGRI Genome Sequencing Program Coordinating CenterU24HG008956 · NHGRI · RUTGERS, THE STATE UNIV OF N.J. · PI BUYSKE, STEVEN G, MATISE, TARA C. · 2016 to 2020
$4.9M
Genetic Basis of Early Onset Bicuspid Aortic Valve DiseaseR01HL137028 · NHLBI · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI PRAKASH, SIDDHARTH KUMAR · 2017 to 2020
$1.5M
NHGRI NIH HHS U24 HG008956NHGRI NIH HHS UM1 HG006493NHLBI NIH HHS R01 HL109942NHLBI NIH HHS R01 HL137028
6 · The paper itself

Abstract

backgroundBicuspid aortic valve (BAV) is the most common cardiovascular malformation in adults, with a prevalence of 0.5%-2%. The prevalence of BAV in cohorts who were ascertained due to thoracic aortic aneurysms or acute aortic dissections (TAD) is as high as 20%. However, the contribution of causal BAV genes to TAD is not known. Therefore, we evaluated rare deleterious variants of GATA4, NOTCH1, SMAD6, or ROBO4 in patients with BAV who presented with TAD.

methodsOur cohort consisted of 487 probands with Heritable Thoracic Aortic Aneurysms or Dissections (HTAD, 12% BAV, 29% female) and 63 probands with Early onset complications of Bicuspid Aortic Valve disease (EBAV, 63% TAD, 34% female). After whole exome sequencing, we functionally annotated GATA4, NOTCH1, SMAD6, and ROBO4 variants and compared the prevalence of rare variants in these genes to controls without HTAD.

resultsWe identified 11 rare deleterious variants of GATA4, SMAD6, or ROBO4 in 12 (18%) EBAV cases. The burden of rare SMAD6 and GATA4 variants was significantly enriched in EBAV but not in HTAD cases, even among HTAD cases with BAV (p < .003).

conclusionRare variants of NOTCH1, ROBO4, SMAD6, or GATA4 do not significantly contribute to BAV in cohorts with HTAD. We conclude that BAV patients who present with HTAD are a genetically distinct subgroup with implications for genetic testing and prognosis.

Indexed as

AdultAortic Aneurysm, ThoracicBicuspid Aortic Valve DiseaseFemaleGATA4 Transcription FactorGene FrequencyHumansMaleMiddle AgedMutationReceptor, Notch1Receptors, Cell SurfaceRoundabout ProteinsSmad6 ProteinGATA4 protein, humanGATA4 Transcription FactorNOTCH1 protein, humanReceptor, Notch1Receptors, Cell SurfaceROBO4 protein, humanRoundabout ProteinsSmad6 ProteinSMAD6 protein, humanbicuspid aortic valvethoracic aortic aneurysmwhole exome sequence

Identifiers

PMID32748548
PMCPMC7549564
OpenAlexW3047484328

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.