Evidence map›Paper›PMID 32748085›Full record

ArticleBotanical studies2020

Investigation of the effects of P1 on HC-pro-mediated gene silencing suppression through genetics and omics approaches.

Sin-Fen Hu, Wei-Lun Wei, Syuan-Fei Hong, Ru-Ying Fang, Hsin-Yi Wu, Pin-Chun Lin, Neda Sanobar, Hsin-Ping Wang, Margo Sulistio, Chun-Ta Wu and 2 more

Open access · goldAbstract read
In one paragraph

Article in Botanical studies, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
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  6. Review
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  8. Article
  9. Role of Plant Virus Movement Proteins in Suppression of Host RNAi Defense.International journal of molecular sciences · 2023
    Review
  10. Article
  11. Article
  12. Frontiers in microbiology · 2023
    Article
  13. Article
  14. Article
  15. Article
  16. Article
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  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Sin-Fen HuInstitute of Biotechnology, National Taiwan University, Taipei, 106, Taiwan.
Wei-Lun WeiInstitute of Biotechnology, National Taiwan University, Taipei, 106, Taiwan.
Syuan-Fei HongInstitute of Biotechnology, National Taiwan University, Taipei, 106, Taiwan.
Ru-Ying FangInstitute of Biotechnology, National Taiwan University, Taipei, 106, Taiwan.
Hsin-Yi WuInstrumentation Center, National Taiwan University, Taipei, 106, Taiwan.
Pin-Chun LinInstitute of Biotechnology, National Taiwan University, Taipei, 106, Taiwan.
Neda SanobarInstitute of Biotechnology, National Taiwan University, Taipei, 106, Taiwan.
Hsin-Ping WangInstitute of Biotechnology, National Taiwan University, Taipei, 106, Taiwan.
Margo SulistioDepartment of Horticulture and Landscape Architecture, National Taiwan University, Taipei, 106, Taiwan.
Chun-Ta WuDepartment of Horticulture and Landscape Architecture, National Taiwan University, Taipei, 106, Taiwan.
Hsiao-Feng LoDepartment of Horticulture and Landscape Architecture, National Taiwan University, Taipei, 106, Taiwan.
Shih-Shun LinInstitute of Biotechnology, National Taiwan University, Taipei, 106, Taiwan. linss01@ntu.edu.tw.ORCID http://orcid.org/0000-0002-7295-5004
National Taiwan University · TW

Funding

CH Biotech company 08HT654004
6 · The paper itself

Abstract

backgroundPosttranscriptional gene silencing (PTGS) is one of the most important mechanisms for plants during viral infection. However, viruses have also developed viral suppressors to negatively control PTGS by inhibiting microRNA (miRNA) and short-interfering RNA (siRNA) regulation in plants. The first identified viral suppressor, P1/HC-Pro, is a fusion protein that was translated from potyviral RNA. Upon infecting plants, the P1 protein itself is released from HC-Pro by the self-cleaving activity of P1. P1 has an unknown function in enhancing HC-Pro-mediated PTGS suppression. We performed proteomics to identify P1-interacting proteins. We also performed transcriptomics that were generated from Col-0 and various P1/HC-Pro-related transgenic plants to identify novel genes. The results showed several novel genes were identified through the comparative network analysis that might be involved in P1/HC-Pro-mediated PTGS suppression.

resultsFirst, we demonstrated that P1 enhances HC-Pro function and that the mechanism might work through P1 binding to VERNALIZATION INDEPENDENCE 3/SUPERKILLER 8 (VIP3/SKI8), a subunit of the exosome, to interfere with the 5'-fragment of the PTGS-cleaved RNA degradation product. Second, the AGO1 was specifically posttranslationally degraded in transgenic Arabidopsis expressing P1/HC-Pro of turnip mosaic virus (TuMV) (P1/HC

conclusionThrough these genetic and omics approaches, we revealed an overall perspective to identify many critical genes involved in PTGS. These new findings significantly impact in our understanding of P1/HC-Pro-mediated PTGS suppression.

Indexed as

Comparative networkMicroRNAOmicsP1/HC-ProPosttranscriptional gene silencingViral suppressor

Identifiers

PMID32748085
PMCPMC7399735
OpenAlexW3046793028

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.