ArticleScientific reports2020
Comparison of eight complete chloroplast genomes of the endangered Aquilaria tree species (Thymelaeaceae) and their phylogenetic relationships.
Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 20 papers.
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20 citing papers in PubMed, 39 citations in OpenAlex.
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- The Complete Chloroplast Genome of the Vietnamese Endemic SpeciesEcology and evolution · 2025Article
- Phylogenetic analysis of the Critically Endangered Aquilaria khasiana (Thymelaeaceae) using barcode markers and chloroplast genome, with updated conservation status.Scientific reports · 2025Article
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- Comparative analysis of plastid genomes reveals rearrangements, repetitive sequence features, and phylogeny in the Annonaceae.Frontiers in plant science · 2024Article
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- Highly divergent regions in the complete plastome sequences of3 Biotech · 2023Article
- Comparative analysis of chloroplast genomes of endangered heterostylous speciesEcology and evolution · 2023Article
- The Complete Chloroplast Genome Sequence ofGenes · 2022Article
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- Comparative analysis of the complete chloroplast genomes of six threatened subgenus Gynopodium (Magnolia) species.BMC genomics · 2022Article
- Complete chloroplast genome sequencing and comparative analysis of threatened dragon trees Dracaena serrulata and Dracaena cinnabari.Scientific reports · 2022Article
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- Fifteen complete chloroplast genomes of Trapa species (Trapaceae): insight into genome structure, comparative analysis and phylogenetic relationships.BMC plant biology · 2022Article
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- Comparative Chloroplast Genomics of Seven EndangeredFrontiers in plant science · 2022Article
- Comparative Analysis of Complete Chloroplast Genome Sequences inFrontiers in genetics · 2021Article
Corrections and comments
- Erratum issued
Authors and funding
6 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Aquilaria tree species are naturally distributed in the Indomalesian region and are protected against over-exploitation. They produce a fragrant non-timber product of high economic value, agarwood. Ambiguous species delimitation and limited genetic information within Aquilaria are among the impediments to conservation efforts. In this study, we conducted comparative analysis on eight Aquilaria species complete chloroplast (cp) genomes, of which seven were newly sequenced using Illumina HiSeq X Ten platform followed by de novo assembly. Aquilaria cp genomes possess a typical quadripartite structure including gene order and genomic structure. The length of each of the cp genome is about 174 kbp and encoded between 89 and 92 proteins, 38 tRNAs, and 8 rRNAs, with 27 duplicated in the IR (inverted repeat) region. Besides, 832 repeats (forward, reverse, palindrome and complement repeats) and nine highly variable regions were also identified. The phylogenetic analysis suggests that the topology structure of Aquilaria cp genomes were well presented with strong support values based on the cp genomes data set and matches their geographic distribution pattern. In summary, the complete cp genomes will facilitate development of species-specific molecular tools to discriminate Aquilaria species and resolve the evolutionary relationships of members of the Thymelaeaceae family.
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