Evidence map›Paper›PMID 32747711›Full record

ArticleCommunications biology2020

Mutational signature SBS8 predominantly arises due to late replication errors in cancer.

Vinod Kumar Singh, Arnav Rastogi, Xiaoju Hu, Yaqun Wang, Subhajyoti De

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
3.0field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 75 citations in OpenAlex.

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  6. Investigation of DNA Damage Response Genes Validates the Role of DNA Repair in Pediatric Cancer Risk and IdentifiesJournal of clinical oncology : official journal of the American Society of Clinical Oncology · 2025
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  15. A review on trends in development and translation of omics signatures in cancer.Computational and structural biotechnology journal · 2024
    Review
  16. Review
  17. Article
  18. The mutagenic forces shaping the genomic landscape of lung cancer in never smokers.medRxiv : the preprint server for health sciences · 2024
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Vinod Kumar Singh *Rutgers Cancer Institute, Rutgers the State University of New Jersey, New Brunswick, NJ, 08901, USA.
Arnav Rastogi *Rutgers Cancer Institute, Rutgers the State University of New Jersey, New Brunswick, NJ, 08901, USA.
Xiaoju HuRutgers Cancer Institute, Rutgers the State University of New Jersey, New Brunswick, NJ, 08901, USA.
Yaqun WangRutgers Cancer Institute, Rutgers the State University of New Jersey, New Brunswick, NJ, 08901, USA.
Subhajyoti DeRutgers Cancer Institute, Rutgers the State University of New Jersey, New Brunswick, NJ, 08901, USA. subhajyoti.de@rutgers.edu.ORCID http://orcid.org/0000-0002-2313-8593
Rutgers, The State University of New Jersey · US

Funding

Computational approaches for identifying epigenomic contexts of somatic mutationsR01GM129066 · NIGMS · RUTGERS BIOMEDICAL AND HEALTH SCIENCES · PI DE, SUBHAJYOTI · 2019 to 2023
$1.7M
Inference of tumor growth dynamics using genomic dataR21CA248122 · NCI · RBHS -CANCER INSTITUTE OF NEW JERSEY · PI DE, SUBHAJYOTI · 2020 to 2021
$402k
NCI NIH HHS R21 CA248122NCI NIH HHS R21CA248122NIGMS NIH HHS R01 GM129066NIGMS NIH HHS R01GM129066
6 · The paper itself

Abstract

Although a majority of somatic mutations in cancer are passengers, their mutational signatures provide mechanistic insights into mutagenesis and DNA repair processes. Mutational signature SBS8 is common in most cancers, but its etiology is debated. Incorporating genomic, epigenomic, and cellular process features for multiple cell-types we develop genome-wide composite epigenomic context-maps relevant for mutagenesis and DNA repair. Analyzing somatic mutation data from multiple cancer types in their epigenomic contexts, we show that SBS8 preferentially occurs in gene-poor, lamina-proximal, late replicating heterochromatin domains. While SBS8 is uncommon among mutations in non-malignant tissues, in tumor genomes its proportions increase with replication timing and speed, and checkpoint defects further promote this signature - suggesting that SBS8 probably arises due to uncorrected late replication errors during cancer progression. Our observations offer a potential reconciliation among different perspectives in the debate about the etiology of SBS8 and its relationship with other mutational signatures.

Indexed as

DNA Mutational AnalysisDNA DamageDNA RepairDNA ReplicationEpigenesis, GeneticGenome, HumanHeterochromatinHumansMutagenesisNeoplasm ProteinsNeoplasmsHeterochromatinNeoplasm Proteins

Identifiers

PMID32747711
PMCPMC7400754
OpenAlexW3046251354

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.