Evidence map›Paper›PMID 32747579›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

A TDDFT investigation of the Photosystem II reaction center: Insights into the precursors to charge separation.

Maeve A Kavanagh, Joshua K G Karlsson, Jonathan D Colburn, Laura M C Barter, Ian R Gould

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Quasiparticle Self-ConsistentJournal of chemical theory and computation · 2022
    Article
  6. Article
  7. Article
  8. Protein Matrix Control of Reaction Center Excitation in Photosystem II.Journal of the American Chemical Society · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Maeve A KavanaghDepartment of Chemistry, Molecular Sciences Research Hub, Imperial College London, W12 0BZ London, United Kingdom.ORCID 0000-0003-2093-6925
Joshua K G KarlssonMolecular Photonics Laboratory, School of Natural and Environmental Sciences, Newcastle University, Newcastle Upon Tyne NE1 7RU, United Kingdom.ORCID 0000-0001-7281-1257
Jonathan D ColburnSchool of Chemistry, University of St. Andrews, St. Andrews KY16 9ST, Scotland.ORCID 0000-0001-9613-1045
Laura M C BarterDepartment of Chemistry, Molecular Sciences Research Hub, Imperial College London, W12 0BZ London, United Kingdom; l.barter@imperial.ac.uk i.gould@imperial.ac.uk.ORCID 0000-0003-2891-3509
Ian R GouldDepartment of Chemistry, Molecular Sciences Research Hub, Imperial College London, W12 0BZ London, United Kingdom; l.barter@imperial.ac.uk i.gould@imperial.ac.uk.ORCID 0000-0003-3559-0234
Imperial College London · GBNewcastle University · GBUniversity of St Andrews · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Photosystem II (PS II) captures solar energy and directs charge separation (CS) across the thylakoid membrane during photosynthesis. The highly oxidizing, charge-separated state generated within its reaction center (RC) drives water oxidation. Spectroscopic studies on PS II RCs are difficult to interpret due to large spectral congestion, necessitating modeling to elucidate key spectral features. Herein, we present results from time-dependent density functional theory (TDDFT) calculations on the largest PS II RC model reported to date. This model explicitly includes six RC chromophores and both the chlorin phytol chains and the amino acid residues <6 Å from the pigments' porphyrin ring centers. Comparing our wild-type model results with calculations on mutant D1-His-198-Ala and D2-His-197-Ala RCs, our simulated absorption-difference spectra reproduce experimentally observed shifts in known chlorophyll absorption bands, demonstrating the predictive capabilities of this model. We find that inclusion of both nearby residues and phytol chains is necessary to reproduce this behavior. Our calculations provide a unique opportunity to observe the molecular orbitals that contribute to the excited states that are precursors to CS. Strikingly, we observe two high oscillator strength, low-lying states, in which molecular orbitals are delocalized over Chl

Indexed as

Bacterial ProteinsChlorophyllCyanobacteriaKineticsModels, MolecularPhotosynthesisPhotosystem II Protein ComplexThermosynechococcusBacterial ProteinsChlorophyllPhotosystem II Protein Complexcharge-separation precursorsphotosynthesisPhotosystem IIstructure–function relationshipTDDFT

Identifiers

PMID32747579
PMCPMC7443915
OpenAlexW3047078708

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.