Evidence map›Paper›PMID 32747444›Full record

ArticleThe Journal of biological chemistry2020

Extended interaction networks with HCV protease NS3-4A substrates explain the lack of adaptive capability against protease inhibitors.

Georg Dultz, Tetsuro Shimakami, Markus Schneider, Kazuhisa Murai, Daisuke Yamane, Antoine Marion, Tobias M Zeitler, Claudia Stross, Christian Grimm, Rebecca M Richter and 8 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 14 citations in OpenAlex.

  1. Review
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  7. Iris Antes 1969-2021.Bioinformatics advances · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 5 institutions in 4 countries.

Georg DultzDepartment of Internal Medicine 1, Goethe University Hospital Frankfurt, Frankfurt, Germany.
Tetsuro ShimakamiDepartment of Gastroenterology, Kanazawa University Hospital, Kanazawa, Japan.
Markus SchneiderCenter for Integrated Protein Science Munich (CIPSM) at the Department of Life Sciences, Technical University Munich, Freising-Weihenstephan, Germany.
Kazuhisa MuraiDepartment of Gastroenterology, Kanazawa University Hospital, Kanazawa, Japan.
Daisuke YamaneTokyo Metropolitan Institute of Medical Science, Tokyo, Japan.
Antoine MarionCenter for Integrated Protein Science Munich (CIPSM) at the Department of Life Sciences, Technical University Munich, Freising-Weihenstephan, Germany.
Tobias M ZeitlerCenter for Integrated Protein Science Munich (CIPSM) at the Department of Life Sciences, Technical University Munich, Freising-Weihenstephan, Germany.
Claudia StrossDepartment of Internal Medicine 1, Goethe University Hospital Frankfurt, Frankfurt, Germany.
Christian GrimmDepartment of Internal Medicine 1, Goethe University Hospital Frankfurt, Frankfurt, Germany.
Rebecca M RichterDepartment of Internal Medicine 1, Goethe University Hospital Frankfurt, Frankfurt, Germany.
Katrin BäumerDepartment of Internal Medicine 1, Goethe University Hospital Frankfurt, Frankfurt, Germany.
MinKyung YiDepartment of Microbiology and Immunology, University of Texas Medical Branch at Galveston, Galveston, Texas, USA.
Ricardo M BiondiDepartment of Internal Medicine 1, Goethe University Hospital Frankfurt, Frankfurt, Germany; Biomedicine Research Institute of Buenos Aires - CONICET - Partner Institute of the Max Planck Society, Buenos Aires, Argentina.
Stefan ZeuzemDepartment of Internal Medicine 1, Goethe University Hospital Frankfurt, Frankfurt, Germany; University Center for Infectious Diseases, Goethe University Hospital Frankfurt, Frankfurt, Germany.
Robert TampéInstitute of Biochemistry, Biocenter and Cluster of Excellence-Macromolecular Complexes, Goethe University Frankfurt, Frankfurt, Germany.
Iris AntesCenter for Integrated Protein Science Munich (CIPSM) at the Department of Life Sciences, Technical University Munich, Freising-Weihenstephan, Germany.
Christian M LangeDepartment of Internal Medicine 1, Goethe University Hospital Frankfurt, Frankfurt, Germany.
Christoph WelschDepartment of Internal Medicine 1, Goethe University Hospital Frankfurt, Frankfurt, Germany; University Center for Infectious Diseases, Goethe University Hospital Frankfurt, Frankfurt, Germany. Electronic address: christoph.welsch@kgu.de.
Goethe University Frankfurt · DECenter for Integrated Protein Science Munich · DEKanazawa University Hospital · JPThe University of Texas Medical Branch at Galveston · USTokyo Metropolitan Institute of Medical Science · JP

Funding

Mechanistic function of HCV NS5A targeted by the potent inhibitorsR01AI146227 · NIAID · UNIVERSITY OF TEXAS MED BR GALVESTON · PI YI, MINKYUNG · 2020 to 2024
$2.8M
Mechanisms of HCV AssemblyR01AI110358 · NIAID · UNIVERSITY OF TEXAS MED BR GALVESTON · PI YI, MINKYUNG · 2015 to 2019
$1.9M
NIAID NIH HHS R01 AI110358NIAID NIH HHS R01 AI146227
6 · The paper itself

Abstract

Inhibitors against the NS3-4A protease of hepatitis C virus (HCV) have proven to be useful drugs in the treatment of HCV infection. Although variants have been identified with mutations that confer resistance to these inhibitors, the mutations do not restore replicative fitness and no secondary mutations that rescue fitness have been found. To gain insight into the molecular mechanisms underlying the lack of fitness compensation, we screened known resistance mutations in infectious HCV cell culture with different genomic backgrounds. We observed that the Q41R mutation of NS3-4A efficiently rescues the replicative fitness in cell culture for virus variants containing mutations at NS3-Asp

Indexed as

Adaptor Proteins, Signal TransducingMolecular Dynamics SimulationAmino Acid SubstitutionCell Line, TumorHepacivirusHumansMutation, MissenseProtease InhibitorsSerine ProteasesViral Nonstructural ProteinsVirus ReplicationAdaptor Proteins, Signal TransducingMAVS protein, humanNS3-4A serine protease, Hepatitis C virusProtease InhibitorsSerine ProteasesViral Nonstructural Proteinsadaptationdrug resistanceevolutionhepatitis C virus (HCV)mitochondrial antiviral signaling protein (MAVS)molecular adaptationmolecular biologymolecular dynamicsprotease inhibitorreplicative fitnessresistance mutationserine protease (NS3-4A)structure constraints

Identifiers

PMID32747444
PMCPMC7535904
OpenAlexW3047269537

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.