Evidence map›Paper›PMID 32745977›Full record

ArticleMedical image analysis2020

Time-distanced gates in long short-term memory networks.

Riqiang Gao, Yucheng Tang, Kaiwen Xu, Yuankai Huo, Shunxing Bao, Sanja L Antic, Emily S Epstein, Steve Deppen, Alexis B Paulson, Kim L Sandler and 2 more

Abstract read
In one paragraph

Article in Medical image analysis, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Longitudinal Multimodal Transformer Integrating Imaging and Latent Clinical Signatures From Routine EHRs for Pulmonary Nodule Classification.Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention · 2023
    Article
  6. Review
  7. Article
  8. Review
  9. Time-distance vision transformers in lung cancer diagnosis from longitudinal computed tomography.Proceedings of SPIE--the International Society for Optical Engineering · 2023
    Article
  10. Article
  11. Article
  12. Article
  13. Deep Learning-Based Long Term Mortality Prediction in the National Lung Screening Trial.IEEE access : practical innovations, open solutions · 2022
    Article
  14. The impact of the lung EDRN-CVC on Phase 1, 2, & 3 biomarker validation studies.Cancer biomarkers : section A of Disease markers · 2022
    Article
  15. Article
  16. Deep Multi-path Network Integrating Incomplete Biomarker and Chest CT Data for Evaluating Lung Cancer Risk.Proceedings of SPIE--the International Society for Optical Engineering · 2021
    Article
  17. Development and Characterization of a Chest CT Atlas.Proceedings of SPIE--the International Society for Optical Engineering · 2021
    Article
  18. Extending the value of routine lung screening CT with quantitative body composition assessment.Proceedings of SPIE--the International Society for Optical Engineering
    Article
  19. Lung Cancer Risk Estimation with Incomplete Data: A Joint Missing Imputation Perspective.Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Riqiang GaoElectrical Engineering and Computer Science, Vanderbilt University, Nashville, TN 37235, USA. Electronic address: riqiang.gao@vanderbilt.edu.
Yucheng TangElectrical Engineering and Computer Science, Vanderbilt University, Nashville, TN 37235, USA.
Kaiwen XuElectrical Engineering and Computer Science, Vanderbilt University, Nashville, TN 37235, USA.
Yuankai HuoElectrical Engineering and Computer Science, Vanderbilt University, Nashville, TN 37235, USA.
Shunxing BaoElectrical Engineering and Computer Science, Vanderbilt University, Nashville, TN 37235, USA.
Sanja L AnticMedicine, Vanderbilt University School of Medicine, Nashville, TN 37235, USA.
Emily S EpsteinMedicine, Vanderbilt University School of Medicine, Nashville, TN 37235, USA.
Steve DeppenThoracic Surgery, Vanderbilt University Medical Center, Nashville, TN 37235, USA.
Alexis B PaulsonRadiology, Vanderbilt University Medical Center, Nashville, TN 37235, USA.
Kim L SandlerRadiology, Vanderbilt University Medical Center, Nashville, TN 37235, USA.
Pierre P MassionMedicine, Vanderbilt University School of Medicine, Nashville, TN 37235, USA.
Bennett A LandmanElectrical Engineering and Computer Science, Vanderbilt University, Nashville, TN 37235, USA; Radiology, Vanderbilt University Medical Center, Nashville, TN 37235, USA.

Funding

VANDERBILT UNIVERSITY CTSA FOR PEDIATRIC RESEARCHUL1RR024975 · NCRR · VANDERBILT UNIVERSITY · PI BERNARD, GORDON RAPHAEL · 2007 to 2011
$45.7M
The Vanderbilt Institute for Clinical and Translational Research (VICTR)UL1TR000445 · NCATS · VANDERBILT UNIVERSITY MEDICAL CENTER · PI BERNARD, GORDON RAPHAEL · 2012 to 2016
$41.4M
Validation of Biomarkers of Risk for the Early Detection of Lung CancerU01CA152662 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI DEPPEN, STEPHEN, GROGAN, ERIC L · 2010 to 2025
$12.8M
Cellular, molecular and quantitative imaging analysis of screening-detected lung adenocarcinomaU01CA196405 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI MALDONADO, FABIEN · 2015 to 2020
$5.4M
Controlling Quality and Capturing Uncertainty in Advanced Diffusion Weighted MRIR01EB017230 · NIBIB · VANDERBILT UNIVERSITY · PI LANDMAN, BENNETT A. · 2015 to 2024
$5.1M
National Science Foundation 1452485NCATS NIH HHS UL1 TR000445NCI NIH HHS U01 CA152662NCI NIH HHS U01 CA196405NCRR NIH HHS UL1 RR024975NIBIB NIH HHS R01 EB017230
6 · The paper itself

Abstract

The Long Short-Term Memory (LSTM) network is widely used in modeling sequential observations in fields ranging from natural language processing to medical imaging. The LSTM has shown promise for interpreting computed tomography (CT) in lung screening protocols. Yet, traditional image-based LSTM models ignore interval differences, while recently proposed interval-modeled LSTM variants are limited in their ability to interpret temporal proximity. Meanwhile, clinical imaging acquisition may be irregularly sampled, and such sampling patterns may be commingled with clinical usages. In this paper, we propose the Distanced LSTM (DLSTM) by introducing time-distanced (i.e., time distance to the last scan) gates with a temporal emphasis model (TEM) targeting at lung cancer diagnosis (i.e., evaluating the malignancy of pulmonary nodules). Briefly, (1) the time distance of every scan to the last scan is modeled explicitly, (2) time-distanced input and forget gates in DLSTM are introduced across regular and irregular sampling sequences, and (3) the newer scan in serial data is emphasized by the TEM. The DLSTM algorithm is evaluated with both simulated data and real CT images (from 1794 National Lung Screening Trial (NLST) patients with longitudinal scans and 1420 clinical studied patients). Experimental results on simulated data indicate the DLSTM can capture families of temporal relationships that cannot be detected with traditional LSTM. Cross-validation on empirical CT datasets demonstrates that DLSTM achieves leading performance on both regularly and irregularly sampled data (e.g., improving LSTM from 0.6785 to 0.7085 on F1 score in NLST). In external-validation on irregularly acquired data, the benchmarks achieved 0.8350 (CNN feature) and 0.8380 (with LSTM) on AUC score, while the proposed DLSTM achieves 0.8905. In conclusion, the DLSTM approach is shown to be compatible with families of linear, quadratic, exponential, and log-exponential temporal models. The DLSTM can be readily extended with other temporal dependence interactions while hardly increasing overall model complexity.

Indexed as

Neural Networks, ComputerAlgorithmsHumansNatural Language ProcessingTomography, X-Ray ComputedDistanced LSTMLongitudinalLung cancer diagnosisTemporal Emphasis Model

Identifiers

PMID32745977
PMCPMC7484010

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.