Evidence map›Paper›PMID 32744497›Full record

ArticleeLife2020

EDF1 coordinates cellular responses to ribosome collisions.

Niladri K Sinha, Alban Ordureau, Katharina Best, James A Saba, Boris Zinshteyn, Elayanambi Sundaramoorthy, Amit Fulzele, Danielle M Garshott, Timo Denk, Matthias Thoms and 5 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 118 papers.

0numbers the graph read from it
0cells of the map it votes in
118citing papers in PubMed
8.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

118 citing papers in PubMed, 182 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Ribosome-associated quality control and related mechanisms.Nature structural & molecular biology · 2026
    Review
  8. Article
  9. Quality control and signaling pathways at stalled ribosomes.Experimental & molecular medicine · 2026
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Review
  19. Article
  20. Review

58 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 2 countries.

Niladri K Sinha *Department of Molecular Biology and Genetics, Howard Hughes Medical Institute, Johns Hopkins University School of Medicine, Baltimore, United States.ORCID 0000-0002-9143-495X
Alban Ordureau *Department of Cell Biology, Blavatnik Institute of Harvard Medical School, Boston, United States.ORCID 0000-0002-4924-8520
Katharina Best *Gene Center, Department of Biochemistry, Ludwig-Maximilians-Universität München, Munich, Germany.
James A SabaDepartment of Molecular Biology and Genetics, Howard Hughes Medical Institute, Johns Hopkins University School of Medicine, Baltimore, United States.ORCID 0000-0003-3453-8151
Boris ZinshteynDepartment of Molecular Biology and Genetics, Howard Hughes Medical Institute, Johns Hopkins University School of Medicine, Baltimore, United States.ORCID 0000-0003-0103-3501
Elayanambi SundaramoorthySection of Cell and Developmental Biology, Division of Biological Sciences, University of California, San Diego, San Diego, United States.ORCID 0000-0003-1256-9758
Amit FulzeleSection of Cell and Developmental Biology, Division of Biological Sciences, University of California, San Diego, San Diego, United States.
Danielle M GarshottSection of Cell and Developmental Biology, Division of Biological Sciences, University of California, San Diego, San Diego, United States.ORCID 0000-0002-4357-1781
Timo DenkGene Center, Department of Biochemistry, Ludwig-Maximilians-Universität München, Munich, Germany.
Matthias ThomsGene Center, Department of Biochemistry, Ludwig-Maximilians-Universität München, Munich, Germany.
Joao A PauloDepartment of Cell Biology, Blavatnik Institute of Harvard Medical School, Boston, United States.
J Wade HarperDepartment of Cell Biology, Blavatnik Institute of Harvard Medical School, Boston, United States.ORCID 0000-0002-6944-7236
Eric J BennettSection of Cell and Developmental Biology, Division of Biological Sciences, University of California, San Diego, San Diego, United States.ORCID 0000-0002-1201-3314
Roland BeckmannGene Center, Department of Biochemistry, Ludwig-Maximilians-Universität München, Munich, Germany.ORCID 0000-0003-4291-3898
Rachel GreenDepartment of Molecular Biology and Genetics, Howard Hughes Medical Institute, Johns Hopkins University School of Medicine, Baltimore, United States.ORCID 0000-0001-9337-2003
Howard Hughes Medical Institute · USLudwig-Maximilians-Universität München · DEUniversity of California San Diego · USHarvard University · US

Funding

GENETIC MECHANISMS AND REGULATIONT32GM007240 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HAMPTON, RANDOLPH Y. · 1985 to 2019
$23.8M
Medical Scientist Training ProgramT32GM136577 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI ANDREA L COX · 2020 to 2026
$13.4M
Ubiquitin Mediated Proteolysis and Cell Cycle ControlR01AG011085 · NIA · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI JEFFREY W HARPER · 1993 to 2026
$10.9M
Molecular mechanisms of ribosome pausing and the cellular responseR37GM059425 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI GREEN, RACHEL · 2014 to 2023
$3.5M
Systematic discovery and functional analysis of the PARKIN modified proteomeR37NS083524 · NINDS · HARVARD MEDICAL SCHOOL · PI HARPER, JEFFREY W · 2013 to 2019
$3.0M
Manipulating Protein Homeostasis through Specialized Quality Control RibosomesDP2GM119132 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BENNETT, ERIC J · 2015 to 2015
$2.3M
Regulation of PINK1 and PARKIN-Dependent MitophagyR01NS083524 · NINDS · HARVARD MEDICAL SCHOOL · PI HARPER, JEFFREY W · 2020 to 2024
$2.2M
Advancing Multiplexed Isobaric Tag-based Strategies for Proteome ProfilingR01GM132129 · NIGMS · HARVARD MEDICAL SCHOOL · PI PAULO, JOAO A · 2019 to 2023
$1.7M
Defining the function and mechanism of regulatory ribosomal ubiquitylationR01GM136994 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BENNETT, ERIC J · 2021 to 2023
$1.1M
Mechanisms for establishment and recognition of stop codon contextK99GM135450 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI ZINSHTEYN, BORIS · 2020 to 2020
$90k
Howard Hughes Medical InstituteNIA NIH HHS AG011085NIA NIH HHS R01 AG011085NIGMS NIH HHS 5K99GM135450-02NIGMS NIH HHS DP2 GM119132NIGMS NIH HHS K99 GM135450NIGMS NIH HHS R01 GM132129NIGMS NIH HHS R01 GM136994NIGMS NIH HHS R37 GM059425NIGMS NIH HHS T32 GM007240NIGMS NIH HHS T32 GM136577NINDS NIH HHS R01 NS083524NINDS NIH HHS R37 NS083524
6 · The paper itself

Abstract

Translation of aberrant mRNAs induces ribosomal collisions, thereby triggering pathways for mRNA and nascent peptide degradation and ribosomal rescue. Here we use sucrose gradient fractionation combined with quantitative proteomics to systematically identify proteins associated with collided ribosomes. This approach identified Endothelial differentiation-related factor 1 (EDF1) as a novel protein recruited to collided ribosomes during translational distress. Cryo-electron microscopic analyses of EDF1 and its yeast homolog Mbf1 revealed a conserved 40S ribosomal subunit binding site at the mRNA entry channel near the collision interface. EDF1 recruits the translational repressors GIGYF2 and EIF4E2 to collided ribosomes to initiate a negative-feedback loop that prevents new ribosomes from translating defective mRNAs. Further, EDF1 regulates an immediate-early transcriptional response to ribosomal collisions. Our results uncover mechanisms through which EDF1 coordinates multiple responses of the ribosome-mediated quality control pathway and provide novel insights into the intersection of ribosome-mediated quality control with global transcriptional regulation.

Indexed as

Calmodulin-Binding ProteinsHCT116 CellsHEK293 CellsHumansProtein BiosynthesisRibosomesSaccharomyces cerevisiae ProteinsTranscription FactorsCalmodulin-Binding ProteinsEDF1 protein, humanMBF1 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsTranscription Factorsbiochemistrycell biologychemical biologyhumanquality controlribosomal collisionsribosometranscriptional response

Identifiers

PMID32744497
PMCPMC7486125
OpenAlexW3046992336

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.