Evidence map›Paper›PMID 32744303›Full record

ArticleBioscience reports2020

Mining novel cell glycolysis related gene markers that can predict the survival of colon adenocarcinoma patients.

Sihan Chen, Guodong Cao, Wei Wu, Yida Lu, Xiaobo He, Lei Yang, Ke Chen, Bo Chen, MaoMing Xiong

Open access · goldAbstract read
In one paragraph

Article in Bioscience reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.5field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 35 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Sihan Chen *Department of General Surgery, The First Affiliated Hospital of Anhui Medical University, Hefei, Anhui China.
Guodong Cao *Department of General Surgery, The First Affiliated Hospital of Anhui Medical University, Hefei, Anhui China.
Wei WuDepartment of General Surgery, The First Affiliated Hospital of Anhui Medical University, Hefei, Anhui China.
Yida LuDepartment of General Surgery, The First Affiliated Hospital of Anhui Medical University, Hefei, Anhui China.
Xiaobo HeDepartment of General Surgery, The First Affiliated Hospital of Anhui Medical University, Hefei, Anhui China.
Lei YangDepartment of General Surgery, The First Affiliated Hospital of Anhui Medical University, Hefei, Anhui China.
Ke ChenDepartment of General Surgery, The First Affiliated Hospital of Anhui Medical University, Hefei, Anhui China.
Bo Chen *Department of General Surgery, The First Affiliated Hospital of Anhui Medical University, Hefei, Anhui China.
MaoMing Xiong *Department of General Surgery, The First Affiliated Hospital of Anhui Medical University, Hefei, Anhui China.
Anhui Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Colon adenocarcinoma (COAD) is a malignant gastrointestinal tumor, often occurring in the left colon, which is regulated by glycolysis-related processes. In past studies, multiple genes that influence the prognosis for survival have been discovered through bioinformatics analysis. However, the prediction of disease prognosis using a single gene is not an accurate method. In the present study, a mechanistic model was established to achieve better prediction for the prognosis of COAD. COAD-related data downloaded from The Cancer Genome Atlas (TCGA) were correlated with the glycolysis process using gene set enrichment analysis (GSEA) to determine the glycolysis-related genes that regulate COAD. Using COX regression analysis, glycolysis-related genes associated with the prognosis of COAD were identified, and the genes screened to establish a predictive model. The risk scores of this model were correlated with relevant clinical data to obtain a connection diagram between the model and survival rate, tumor characteristic data, etc. Finally, genes in the model were correlated with cells in the tumor microenvironment, finding that they affected specific immune cells in the model. Seven genes related to glycolysis were identified (PPARGC1A, DLAT, 6PC2, P4HA1, STC2, ANKZF1, and GPC1), which affect the prognosis of patients with COAD and constitute the model for prediction of survival of COAD patients.

Indexed as

Computational BiologyGene Expression ProfilingTranscriptomeAdenocarcinomaBiomarkers, TumorColonic NeoplasmsDatabases, GeneticData MiningGene Regulatory NetworksGlycolysisHumansPrognosisRisk AssessmentRisk FactorsTumor MicroenvironmentBiomarkers, TumorColon adenocarcinomaGlycolysismRNAPrognosticSurvivaltumor microenvironmentsts

Identifiers

PMID32744303
PMCPMC7426632
OpenAlexW3047151923

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.