Evidence map›Paper›PMID 32742640›Full record

ArticleF1000Research2020

Interactive exploratory data analysis of Integrative Human Microbiome Project data using Metaviz.

Justin Wagner, Jayaram Kancherla, Domenick Braccia, James Matsumara, Victor Felix, Jonathan Crabtree, Anup Mahurkar, Héctor Corrada Bravo

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in F1000Research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Justin WagnerDepartment of Computer Science, University of Maryland, College Park, College Park, Maryland, 20742, USA.
Jayaram KancherlaCenter for Bioinformatics and Computational Biology, University of Maryland, College Park, College Park, Maryland, 20742, USA.ORCID 0000-0001-5855-5031
Domenick BracciaCenter for Bioinformatics and Computational Biology, University of Maryland, College Park, College Park, Maryland, 20742, USA.
James MatsumaraInstitute for Genome Sciences, University of Maryland, Baltimore, Baltimore, Maryland, 21201, USA.
Victor FelixInstitute for Genome Sciences, University of Maryland, Baltimore, Baltimore, Maryland, 21201, USA.
Jonathan CrabtreeInstitute for Genome Sciences, University of Maryland, Baltimore, Baltimore, Maryland, 21201, USA.
Anup MahurkarInstitute for Genome Sciences, University of Maryland, Baltimore, Baltimore, Maryland, 21201, USA.ORCID 0000-0002-4999-2296
Héctor Corrada BravoDepartment of Computer Science, University of Maryland, College Park, College Park, Maryland, 20742, USA.ORCID 0000-0002-1255-4444

Funding

Longitudinal Multiomics Microbial Profiling in Healthy and Disease IndividualsU54DK102556 · NIDDK · STANFORD UNIVERSITY · PI SNYDER, MICHAEL P., WEINSTOCK, GEORGE M · 2014 to 2015
$7.7M
Integrative Visual and Computational Exploratory Analysis of Genomics DataR01GM114267 · NIGMS · UNIV OF MARYLAND, COLLEGE PARK · PI CORRADA BRAVO, HECTOR · 2015 to 2018
$1.8M
NIDDK NIH HHS U54 DK102556NIGMS NIH HHS R01 GM114267
6 · The paper itself

Abstract

The rich data produced by the second phase of the Human Microbiome Project (iHMP) offers a unique opportunity to test hypotheses that interactions between microbial communities and a human host might impact an individual's health or disease status. In this work we describe infrastructure that integrates Metaviz, an interactive microbiome data analysis and visualization tool, with the iHMP Data Coordination Center web portal and the

Indexed as

Data AnalysisMicrobiotaData Interpretation, StatisticalHumansResearch DesignIntergrative Human Microbiome ProjectmetagenomicsR/Bioconductorvisualization

Identifiers

PMID32742640
PMCPMC7366035.2

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.