Evidence map›Paper›PMID 32740898›Full record

ArticlePlant molecular biology2020

Plant-specific Dof transcription factors VASCULAR-RELATED DOF1 and VASCULAR-RELATED DOF2 regulate vascular cell differentiation and lignin biosynthesis in Arabidopsis.

Vasagi Ramachandran, Yuki Tobimatsu, Yamamura Masaomi, Ryosuke Sano, Toshiaki Umezawa, Taku Demura, Misato Ohtani

Abstract read
PubMed Publisher
In one paragraph

Article in Plant molecular biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 33 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Identification of theBiology · 2025
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. DOF gene family expansion and diversification.Genetics and molecular biology · 2024
    Article
  13. Article
  14. Review
  15. Article
  16. Review
  17. Article
  18. Identification and characterization ofFrontiers in plant science · 2023
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Vasagi RamachandranGraduate School of Science and Technology, Nara Institute of Science and Technology, Ikoma, Nara, 630-0192, Japan.
Yuki TobimatsuResearch Institute for Sustainable Humanosphere, Kyoto University, Uji, Kyoto, 611-0011, Japan.ORCID http://orcid.org/0000-0002-7578-7392
Yamamura MasaomiResearch Institute for Sustainable Humanosphere, Kyoto University, Uji, Kyoto, 611-0011, Japan.ORCID http://orcid.org/0000-0002-1204-9229
Ryosuke SanoGraduate School of Science and Technology, Nara Institute of Science and Technology, Ikoma, Nara, 630-0192, Japan.
Toshiaki UmezawaResearch Institute for Sustainable Humanosphere, Kyoto University, Uji, Kyoto, 611-0011, Japan.ORCID http://orcid.org/0000-0003-1135-5387
Taku DemuraGraduate School of Science and Technology, Nara Institute of Science and Technology, Ikoma, Nara, 630-0192, Japan. demura@bs.naist.jp.ORCID http://orcid.org/0000-0002-2499-4738
Misato OhtaniGraduate School of Science and Technology, Nara Institute of Science and Technology, Ikoma, Nara, 630-0192, Japan. misato@edu.k.u-tokyo.ac.jp.ORCID http://orcid.org/0000-0001-5429-3310
Kyoto University · JPNara Institute of Science and Technology · JPThe University of Tokyo · JP

Funding

Exploratory Research for Advanced Technology JPMJER1602Japan Society for the promotion of Science JP20H03271Japan Society for the Promotion of Science JP18H02466Japan Society for the Promotion of Science JP25291062Ministry of Education, Culture, Sports, Science and Technology JP15H01235Ministry of Education, Culture, Sports, Science and Technology JP18H05484Ministry of Education, Culture, Sports, Science and Technology JP18H05489Ministry of Education, Culture, Sports, Science and Technology JP20H05405Ministry of Education, Culture, Sports, Science and Technology JP24114002Ministry of Education, Culture, Sports, Science and Technology JP25114520
6 · The paper itself

Abstract

key messagePlant-specific Dof transcription factors VDOF1 and VDOF2 are novel regulators of vascular cell differentiation through the course of a lifetime in Arabidopsis, with shifting their transcriptional target genes. Vascular system is one of critical tissues for vascular plants to transport low-molecular compounds, such as water, minerals, and the photosynthetic product, sucrose. Here, we report the involvement of two Dof transcription factors, named VASCULAR-RELATED DOF1 (VDOF1)/VDOF4.6 and VDOF2/VDOF1.8, in vascular cell differentiation and lignin biosynthesis in Arabidopsis. VDOF genes were expressed in vascular tissues, but the detailed expression sites were partly different between VDOF1 and VDOF2. Vein patterning and lignin analysis of VDOF overexpressors and double mutant vdof1 vdof2 suggested that VDOF1 and VDOF2 would function as negative regulators of vein formation in seedlings, and lignin deposition in inflorescence stems. Interestingly, effects of VDOF overexpression in lignin deposition were different by developmental stages of inflorescence stems, and total lignin contents were increased and decreased in VDOF1 and VDOF2 overexpressors, respectively. RNA-seq analysis of inducible VDOF overexpressors demonstrated that the genes for cell wall biosynthesis, including lignin biosynthetic genes, and the transcription factor genes related to stress response and brassinosteroid signaling were commonly affected by VDOF1 and VDOF2 overexpression. Taken together, we concluded that VDOF1 and VDOF2 are novel regulators of vascular cell differentiation through the course of a lifetime, with shifting their transcriptional target genes: in seedlings, the VDOF genes negatively regulate vein formation, while at reproductive stages, the VDOF proteins target lignin biosynthesis.

Indexed as

ArabidopsisArabidopsis ProteinsCell DifferentiationDNA-Binding ProteinsGene Expression ProfilingGene Expression Regulation, PlantGene OntologyInflorescenceLigninMutationPlants, Genetically ModifiedPlant StemsSeedsSequence AnalysisTranscription FactorsArabidopsis ProteinsDAG1 protein, ArabidopsisDNA-Binding ProteinsLigninTranscription FactorsArabidopsis thalianaDof transcription factorLigninVascular cell differentiationVASCULAR-RELATED DOF1VASCULAR-RELATED DOF2Vein patterning

Identifiers

PMID32740898
OpenAlexW3046916395

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.