Evidence map›Paper›PMID 32739642›Full record

ArticleJournal of molecular graphics & modelling2020

Prioritizing potential ACE2 inhibitors in the COVID-19 pandemic: Insights from a molecular mechanics-assisted structure-based virtual screening experiment.

Kerem Teralı, Buket Baddal, Hayrettin Ozan Gülcan

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular graphics & modelling, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
8.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 65 citations in OpenAlex.

  1. Article
  2. Inhibiting the Deubiquitinase UCHL1 Reduces SARS-CoV-2 Viral Uptake by ACE2.American journal of respiratory cell and molecular biology · 2023
    Article
  3. Article
  4. A review onExploration of targeted anti-tumor therapy · 2023
    Review
  5. Review
  6. Review
  7. Article
  8. Allosteric Binders of ACE2 Are Promising Anti-SARS-CoV-2 Agents.ACS pharmacology & translational science · 2022
    Article
  9. Article
  10. Allosteric control of ACE2 peptidase domain dynamics.Organic & biomolecular chemistry · 2022
    Article
  11. Review
  12. Allosteric binders of ACE2 are promising anti-SARS-CoV-2 agents.bioRxiv : the preprint server for biology · 2022
    Article
  13. Review
  14. Article
  15. Review
  16. Article
  17. Novel Drug Design for Treatment of COVID-19: A Systematic Review of Preclinical Studies.The Canadian journal of infectious diseases & medical microbiology = Journal canadien des maladies infectieuses et de la microbiologie medicale · 2022
    Review
  18. Review
  19. Whey-Derived Peptides at the Heart of the COVID-19 Pandemic.International journal of molecular sciences · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Kerem TeralıDepartment of Medical Biochemistry, Near East University, Nicosia, 99138, Cyprus; Bioinformatics & Computational Biology Research Group, DESAM Institute, Near East University, Nicosia, 99138, Cyprus. Electronic address: kerem.terali@neu.edu.tr.
Buket BaddalDepartment of Medical Microbiology and Clinical Microbiology, Near East University, Nicosia, 99138, Cyprus; Microbial Pathogenesis Research Group, DESAM Institute, Near East University, Nicosia, 99138, Cyprus.
Hayrettin Ozan GülcanDepartment of Pharmaceutical Chemistry, Eastern Mediterranean University, Famagusta, 99628, Cyprus.
Near East University · CYEastern Mediterranean University · CY

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Angiotensin-converting enzyme 2 (ACE2) is a membrane-bound zinc metallopeptidase that generates the vasodilatory peptide angiotensin 1-7 and thus performs a protective role in heart disease. It is considered an important therapeutic target in controlling the COVID-19 outbreak, since SARS-CoV-2 enters permissive cells via an ACE2-mediated mechanism. The present in silico study attempted to repurpose existing drugs for use as prospective viral-entry inhibitors targeting human ACE2. Initially, a clinically approved drug library of 7,173 ligands was screened against the receptor using molecular docking, followed by energy minimization and rescoring of docked ligands. Finally, potential binders were inspected to ensure molecules with different scaffolds were engaged in favorable contacts with both the metal cofactor and the critical residues lining the receptor's active site. The results of the calculations suggest that lividomycin, burixafor, quisinostat, fluprofylline, pemetrexed, spirofylline, edotecarin, and diniprofylline emerge as promising repositionable drug candidates for stabilizing the closed (substrate/inhibitor-bound) conformation of ACE2, thereby shifting the relative positions of the receptor's critical exterior residues recognized by SARS-CoV-2. This study is among the rare ones in the relevant scientific literature to search for potential ACE2 inhibitors. In practical terms, the drugs, unmodified as they are, may be introduced into the therapeutic armamentarium of the ongoing fight against COVID-19 now, or their scaffolds may serve as rich skeletons for designing novel ACE2 inhibitors in the near future.

Indexed as

Amino Acid MotifsAngiotensin-Converting Enzyme 2Angiotensin-Converting Enzyme InhibitorsAntiviral AgentsBetacoronavirusCarbazolesCatalytic DomainCoronavirus InfectionsCOVID-19Drug RepositioningDyphyllineHost-Pathogen InteractionsHumansHydroxamic AcidsLigandsMolecular Docking SimulationACE2 protein, humanAngiotensin-Converting Enzyme 2Angiotensin-Converting Enzyme InhibitorsAntiviral AgentsCarbazolesdiniprofyllineDyphyllineedotecarinHydroxamic AcidsLigandslividomycinParomomycinPemetrexedPeptidyl-Dipeptidase AquisinostatSmall Molecule LibrariesACE2COVID-19Drug repositioningEntry inhibitorSARS-CoV-2

Identifiers

PMID32739642
PMCPMC7377801
OpenAlexW3045427129

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.