Evidence map›Paper›PMID 32738044›Full record

ArticleNucleic acids research2020

Developmental regulation of edited CYb and COIII mitochondrial mRNAs is achieved by distinct mechanisms in Trypanosoma brucei.

Joseph T Smith, Eva Doleželová, Brianna Tylec, Jonathan E Bard, Runpu Chen, Yijun Sun, Alena Zíková, Laurie K Read

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.0field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
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  3. Mitochondrial DNA Structure inPathogens (Basel, Switzerland) · 2025
    Review
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  10. Article
  11. The Complete Mitochondrial DNA ofFrontiers in cellular and infection microbiology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Joseph T SmithDepartment of Microbiology and Immunology, University at Buffalo - Jacobs School of Medicine and Biomedical Sciences, Buffalo, NY 14203, USA.
Eva DoleželováInstitute of Parasitology, Biology Centre Czech Academy of Science, České Budejovice, Czech Republic.
Brianna TylecDepartment of Microbiology and Immunology, University at Buffalo - Jacobs School of Medicine and Biomedical Sciences, Buffalo, NY 14203, USA.
Jonathan E BardGenomics and Bioinformatics Core, University at Buffalo, Buffalo, NY 14203, USA.
Runpu ChenDepartment of Computer Science and Engineering, University at Buffalo, Buffalo, NY 14260, USA.
Yijun SunDepartment of Microbiology and Immunology, University at Buffalo - Jacobs School of Medicine and Biomedical Sciences, Buffalo, NY 14203, USA.
Alena ZíkováInstitute of Parasitology, Biology Centre Czech Academy of Science, České Budejovice, Czech Republic.
Laurie K ReadDepartment of Microbiology and Immunology, University at Buffalo - Jacobs School of Medicine and Biomedical Sciences, Buffalo, NY 14203, USA.
University at Buffalo, State University of New York · USInstitute of Parasitology · CZ

Funding

Kinetoplastid RNA editingR01GM129041 · NIGMS · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI READ, LAURIE K. · 2018 to 2021
$1.6M
NIGMS NIH HHS R01 GM129041
6 · The paper itself

Abstract

Trypanosoma brucei is a parasitic protozoan that undergoes a complex life cycle involving insect and mammalian hosts that present dramatically different nutritional environments. Mitochondrial metabolism and gene expression are highly regulated to accommodate these environmental changes, including regulation of mRNAs that require extensive uridine insertion/deletion (U-indel) editing for their maturation. Here, we use high throughput sequencing and a method for promoting life cycle changes in vitro to assess the mechanisms and timing of developmentally regulated edited mRNA expression. We show that edited CYb mRNA is downregulated in mammalian bloodstream forms (BSF) at the level of editing initiation and/or edited mRNA stability. In contrast, edited COIII mRNAs are depleted in BSF by inhibition of editing progression. We identify cell line-specific differences in the mechanisms abrogating COIII mRNA editing, including the possible utilization of terminator gRNAs that preclude the 3' to 5' progression of editing. By examining the developmental timing of altered mitochondrial mRNA levels, we also reveal transcript-specific developmental checkpoints in epimastigote (EMF), metacyclic (MCF), and BSF. These studies represent the first analysis of the mechanisms governing edited mRNA levels during T. brucei development and the first to interrogate U-indel editing in EMF and MCF life cycle stages.

Indexed as

MitochondriaProtozoan ProteinsRNA EditingRNA, Guide, KinetoplastidaRNA, MessengerRNA, MitochondrialRNA, ProtozoanRNA StabilityTrypanosoma brucei bruceimitochondrial messenger RNAProtozoan ProteinsRNA, Guide, KinetoplastidaRNA, MessengerRNA, MitochondrialRNA, Protozoan

Identifiers

PMID32738044
PMCPMC7470970
OpenAlexW3046663296

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.