Evidence map›Paper›PMID 32737808›Full record

ReviewGenes & genomics2020

The SnRK2 family in pepper (Capsicum annuum L.): genome-wide identification and expression analyses during fruit development and under abiotic stress.

Zhiming Wu, Jiaowen Cheng, Fang Hu, Cheng Qin, Xiaowan Xu, Kailin Hu

Abstract readReview
PubMed Publisher
In one paragraph

Review in Genes & genomics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
3.2field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Genome-Wide Identification of theInternational journal of molecular sciences · 2025
    Article
  5. Article
  6. Evolutionary Analysis ofInternational journal of molecular sciences · 2023
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Characterization ofFrontiers in plant science · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Zhiming WuCollege of Horticulture and Landscape Architecture, Zhongkai University of Agriculture and Engineering, Guangzhou, 510225, Guangdong, China. zhiming_wu521@hotmail.com.ORCID 0000-0001-8988-6060
Jiaowen ChengCollege of Horticulture, South China Agricultural University, Guangzhou, 510640, Guangdong, China.
Fang HuCollege of Horticulture, South China Agricultural University, Guangzhou, 510640, Guangdong, China.
Cheng QinPepper Institute, Zunyi Academy of Agricultural Sciences, Zunyi, 563000, Guizhou, China.
Xiaowan XuInstitute of Vegetable, Guangdong Academy of Agricultural Sciences, Guangzhou, 510642, Guangdong, China.
Kailin HuCollege of Horticulture, South China Agricultural University, Guangzhou, 510640, Guangdong, China.
South China Agricultural University · CNGuangdong Academy of Agricultural Sciences · CNGuizhou Academy of Agricultural Sciences · CNZhongkai University of Agriculture and Engineering · CN

Funding

Guangzhou Science and Technology Program key projects 201704020019Guizhou Science and Technology Department 201612National Natural Science Foundation of China 31672162National Natural Science Foundation of China 31701921Natural Science Foundation of Guangdong Province 2018A030313020
6 · The paper itself

Abstract

Plant-specific SnRK2 (sucrose nonfermenting-1-related protein kinase 2) genes play crucial roles in the coordination of plant growth and development and responses to stress. However, comprehensive studies have not been performed for this gene family in pepper (Capsicum annuum), a very important Solanaceous vegetable worldwide. To fully understand the status of SnRK2s in chili pepper, a total of 9 putative SnRK2 genes (named CaSnRK2.1-2.9) were identified in pepper in the present study. These genes were located on 7 different chromosomes and classified into three subfamilies based on the phylogenetic tree. Their conserved motif compositions and exon-intron structures were systematically analyzed, and the results strongly supported the classification. Furthermore, a total of 81 putative cis-elements were found in the promoter regions, and the cis-elements related to hormone and stress signaling were abundant. Finally, the CaSnRK2 gene expression profiles among different tissues, especially developing fruit tissue, and under various abiotic stresses were investigated to identify tissue-specific or stress-responsive candidates. This study was the first to comprehensively investigate the SnRK2 family in pepper, and the results provide important clues for further functional analyses of fruit development and abiotic stress responses.

Indexed as

Arabidopsis ProteinsCapsicumFruitGene Expression Regulation, PlantOrgan SpecificityPlant DevelopmentProtein Serine-Threonine KinasesStress, PhysiologicalArabidopsis ProteinsProtein Serine-Threonine KinasesSnRK2 protein, ArabidopsisAbiotic stressFruit developmentGene expressionPepper (Capsicum annuum L.)SnRK2 family

Identifiers

PMID32737808
OpenAlexW3046260611

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.