Evidence map›Paper›PMID 32737323›Full record

ArticleNature communications2020

A distal regulatory region of a class I human histone deacetylase.

Nicolas D Werbeck, Vaibhav Kumar Shukla, Micha B A Kunze, Havva Yalinca, Ruth B Pritchard, Lucas Siemons, Somnath Mondal, Simon O R Greenwood, John Kirkpatrick, Charles M Marson and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
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  10. Intrinsic structural dynamics dictate enzymatic activity and inhibition.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  11. Article
  12. Article
  13. Carbon quantum dots in bioimaging and biomedicines.Frontiers in bioengineering and biotechnology · 2023
    Review
  14. Article
  15. Article
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  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Nicolas D Werbeck *Institute of Structural and Molecular Biology, Division of Biosciences, University College London, London, WC1E 6BT, UK.
Vaibhav Kumar Shukla *Institute of Structural and Molecular Biology, Division of Biosciences, University College London, London, WC1E 6BT, UK.ORCID http://orcid.org/0000-0001-5342-258X
Micha B A KunzeInstitute of Structural and Molecular Biology, Division of Biosciences, University College London, London, WC1E 6BT, UK.ORCID http://orcid.org/0000-0001-8922-5510
Havva YalincaInstitute of Structural and Molecular Biology, Division of Biosciences, University College London, London, WC1E 6BT, UK.
Ruth B PritchardInstitute of Structural and Molecular Biology, Division of Biosciences, University College London, London, WC1E 6BT, UK.ORCID http://orcid.org/0000-0001-5334-2432
Lucas SiemonsInstitute of Structural and Molecular Biology, Division of Biosciences, University College London, London, WC1E 6BT, UK.ORCID http://orcid.org/0000-0003-1330-6773
Somnath MondalInstitute of Structural and Molecular Biology, Division of Biosciences, University College London, London, WC1E 6BT, UK.
Simon O R GreenwoodInstitute of Structural and Molecular Biology, Division of Biosciences, University College London, London, WC1E 6BT, UK.ORCID http://orcid.org/0000-0003-3564-5207
John KirkpatrickInstitute of Structural and Molecular Biology, Division of Biosciences, University College London, London, WC1E 6BT, UK.ORCID http://orcid.org/0000-0002-9761-3377
Charles M MarsonDepartment of Chemistry, University College London, London, WC1E 6BT, UK.
D Flemming HansenInstitute of Structural and Molecular Biology, Division of Biosciences, University College London, London, WC1E 6BT, UK. d.hansen@ucl.ac.uk.ORCID http://orcid.org/0000-0003-0891-220X
Institute of Structural and Molecular Biology · GBNuvisan (Germany) · DEUniversity College London · GB

Funding

Biotechnology and Biological Sciences Research Council BB/H022570/1Biotechnology and Biological Sciences Research Council BB/R000255/1Cancer Research UK FC001029Medical Research Council FC001029Medical Research Council MC_U117533887Wellcome TrustWellcome Trust 102404/13/Z/13
6 · The paper itself

Abstract

Histone deacetylases (HDACs) are key enzymes in epigenetics and important drug targets in cancer biology. Whilst it has been established that HDACs regulate many cellular processes, far less is known about the regulation of these enzymes themselves. Here, we show that HDAC8 is allosterically regulated by shifts in populations between exchanging states. An inactive state is identified, which is stabilised by a range of mutations and resembles a sparsely-populated state in equilibrium with active HDAC8. Computational models show that the inactive and active states differ by small changes in a regulatory region that extends up to 28 Å from the active site. The regulatory allosteric region identified here in HDAC8 corresponds to regions in other class I HDACs known to bind regulators, thus suggesting a general mechanism. The presented results pave the way for the development of allosteric HDAC inhibitors and regulators to improve the therapy for several disease states.

Indexed as

Allosteric RegulationAllosteric SiteCatalytic DomainCloning, MolecularCrystallography, X-RayEnzyme ActivationEscherichia coliGene ExpressionGenetic VectorsHistone Deacetylase InhibitorsHistone DeacetylasesHumansHydroxamic AcidsIndolesMolecular Dynamics SimulationMutationHDAC8 protein, humanHistone Deacetylase InhibitorsHistone DeacetylasesHydroxamic AcidsIndolesRecombinant ProteinsRepressor Proteinstrichostatin AVorinostat

Identifiers

PMID32737323
PMCPMC7395746
OpenAlexW3046629476

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.