Evidence map›Paper›PMID 32737309›Full record

ArticleNature communications2020

Exploiting natural chemical photosensitivity of anhydrotetracycline and tetracycline for dynamic and setpoint chemo-optogenetic control.

Armin Baumschlager, Marc Rullan, Mustafa Khammash

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
3.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 54 citations in OpenAlex.

  1. Article
  2. Article
  3. A Multi-Tetracycline Responsive Induction System for Gene Expression inbioRxiv : the preprint server for biology · 2025
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Opto-chemogenetic inhibition of L-type CaCell reports methods · 2024
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Status quo of tet regulation in bacteria.Microbial biotechnology · 2022
    Review
  18. Review
  19. Review
  20. Cybergenetic control of microbial community composition.Frontiers in bioengineering and biotechnology · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Armin BaumschlagerDepartment of Biosystems Science and Engineering (D-BSSE), ETH-Zürich, Mattenstrasse 26, 4058, Basel, Switzerland.ORCID http://orcid.org/0000-0002-2546-9038
Marc RullanDepartment of Biosystems Science and Engineering (D-BSSE), ETH-Zürich, Mattenstrasse 26, 4058, Basel, Switzerland.
Mustafa KhammashDepartment of Biosystems Science and Engineering (D-BSSE), ETH-Zürich, Mattenstrasse 26, 4058, Basel, Switzerland. mustafa.khammash@bsse.ethz.ch.
ETH Zurich · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The transcriptional inducer anhydrotetracycline (aTc) and the bacteriostatic antibiotic tetracycline (Tc) are commonly used in all fields of biology for control of transcription or translation. A drawback of these and other small molecule inducers is the difficulty of their removal from cell cultures, limiting their application for dynamic control. Here, we describe a simple method to overcome this limitation, and show that the natural photosensitivity of aTc/Tc can be exploited to turn them into highly predictable optogenetic transcriptional- and growth-regulators. This new optogenetic class uniquely features both dynamic and setpoint control which act via population-memory adjustable through opto-chemical modulation. We demonstrate this method by applying it for dynamic gene expression control and for enhancing the performance of an existing optogenetic system. We then expand the utility of the aTc system by constructing a new chemical bandpass filter that increases its aTc response range. The simplicity of our method enables scientists and biotechnologists to use their existing systems employing aTc/Tc for dynamic optogenetic experiments without genetic modification.

Indexed as

Cloning, MolecularDose-Response Relationship, DrugEscherichia coliGene ExpressionGenes, ReporterGenetic VectorsLuminescent ProteinsOptogeneticsPhotolysisProtein BiosynthesisProtein Synthesis InhibitorsRecombinant ProteinsRed Fluorescent ProteinTetracyclineTetracyclinesTranscription, Genetic4-epianhydrotetracyclineLuminescent ProteinsProtein Synthesis InhibitorsRecombinant ProteinsRed Fluorescent ProteinTetracyclineTetracyclines

Identifiers

PMID32737309
PMCPMC7395757
OpenAlexW3046583078

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.