Evidence map›Paper›PMID 32735817›Full record

ArticleCurrent biology : CB2020

Highly Efficient Knockout of a Squid Pigmentation Gene.

Karen Crawford, Juan F Diaz Quiroz, Kristen M Koenig, Namrata Ahuja, Caroline B Albertin, Joshua J C Rosenthal

Open access · bronzeAbstract read
In one paragraph

Article in Current biology : CB, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed, 1 pooled it
5.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 1 synthesis or guideline pooled it, 75 citations in OpenAlex.

  1. Cephalopod Behavior: From Neural Plasticity to Consciousness.Frontiers in systems neuroscience · 2021
    Pooled it
  2. Article
  3. Article
  4. Maintaining microbiota across diverse symbiotic organs inProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  5. A non-invasive method to genotype cephalopod sex by quantitative PCR.bioRxiv : the preprint server for biology · 2025
    Article
  6. Review
  7. Article
  8. Animals : an open access journal from MDPI · 2025
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. A new dawn for the study of cell type evolution.Development (Cambridge, England) · 2024
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Karen CrawfordBiology Department, St. Mary's College of Maryland, 18952 E. Fisher Road, St. Mary's City, MD 20650, USA; The Eugene Bell Center, The Marine Biological Laboratory, 7 MBL Street, Woods Hole, MA 02543, USA.
Juan F Diaz QuirozThe Eugene Bell Center, The Marine Biological Laboratory, 7 MBL Street, Woods Hole, MA 02543, USA.
Kristen M KoenigDepartment of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 01451, USA; John Harvard Distinguished Science Fellowship Program, Harvard University, Cambridge, MA 01451, USA.
Namrata AhujaThe Eugene Bell Center, The Marine Biological Laboratory, 7 MBL Street, Woods Hole, MA 02543, USA.
Caroline B AlbertinThe Eugene Bell Center, The Marine Biological Laboratory, 7 MBL Street, Woods Hole, MA 02543, USA.
Joshua J C RosenthalThe Eugene Bell Center, The Marine Biological Laboratory, 7 MBL Street, Woods Hole, MA 02543, USA. Electronic address: jrosenthal@mbl.edu.
Marine Biological Laboratory · USHarvard University Press · US

Funding

Investigating Organ Formation and the Emergence of Complexity in the Visual System Using Comparative Developmental ApproachesDP5OD023111 · OD · HARVARD UNIVERSITY · PI KOENIG, KRISTEN MARIE · 2016 to 2020
$2.1M
NIH HHS DP5 OD023111
6 · The paper itself

Abstract

Seminal studies using squid as a model led to breakthroughs in neurobiology. The squid giant axon and synapse, for example, laid the foundation for our current understanding of the action potential [1], ionic gradients across cells [2], voltage-dependent ion channels [3], molecular motors [4-7], and synaptic transmission [8-11]. Despite their anatomical advantages, the use of squid as a model receded over the past several decades as investigators turned to genetically tractable systems. Recently, however, two key advances have made it possible to develop techniques for the genetic manipulation of squid. The first is the CRISPR-Cas9 system for targeted gene disruption, a largely species-agnostic method [12, 13]. The second is the sequencing of genomes for several cephalopod species [14-16]. If made genetically tractable, squid and other cephalopods offer a wealth of biological novelties that could spur discovery. Within invertebrates, not only do they possess by far the largest brains, they also express the most sophisticated behaviors [17]. In this paper, we demonstrate efficient gene knockout in the squid Doryteuthis pealeii using CRISPR-Cas9. Ommochromes, the pigments found in squid retinas and chromatophores, are derivatives of tryptophan, and the first committed step in their synthesis is normally catalyzed by Tryptophan 2,3 Dioxygenase (TDO [18-20]). Knocking out TDO in squid embryos efficiently eliminated pigmentation. By precisely timing CRISPR-Cas9 delivery during early development, the degree of pigmentation could be finely controlled. Genotyping revealed knockout efficiencies routinely greater than 90%. This study represents a critical advancement toward making squid genetically tractable.

Indexed as

CRISPR-Cas SystemsGene Knockout TechniquesPigmentationAnimalsChromatophoresDecapodiformesEmbryo, NonmammalianPhenotypeTryptophan OxygenaseTryptophan OxygenasecephalopodschromatophoresCRISPR-Cas9Doryteuthis pealeiiommochromessquidTDOTryptophan 2,3 dioxygenase

Identifiers

PMID32735817
PMCPMC7484294
OpenAlexW3045832665

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.