Evidence map›Paper›PMID 32734807›Full record

ArticleSLAS discovery : advancing life sciences R & D2021

Identification of Small-Molecule Inhibitors of Neutral Ceramidase (nCDase) via Target-Based High-Throughput Screening.

Yuka Otsuka, Michael V Airola, Yong-Mi Choi, Nicolas Coant, Justin Snider, Chris Cariello, Essa M Saied, Christoph Arenz, Thomas Bannister, Ron Rahaim and 5 more

Open access · hybridAbstract read
In one paragraph

Article in SLAS discovery : advancing life sciences R & D, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.8field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 16 citations in OpenAlex.

  1. Central Roles of Glucosylceramide in Driving Cancer Pathogenesis.International journal of molecular sciences · 2025
    Review
  2. Article
  3. SARS-CoV-2 MSLAS discovery : advancing life sciences R & D · 2024
    Article
  4. Review
  5. Article
  6. Article
  7. High-throughput discovery of novel small-molecule inhibitors of acid Ceramidase.Journal of enzyme inhibition and medicinal chemistry · 2023
    Article
  8. Article
  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 3 countries.

Yuka OtsukaDepartment of Molecular Medicine, Scripps Research, The Scripps Research Molecular Screening Center, Jupiter, FL, USA.
Michael V AirolaDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, NY, USA.
Yong-Mi ChoiDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, NY, USA.
Nicolas CoantStony Brook University Cancer Center, Stony Brook, NY, USA.ORCID 0000-0001-9237-2132
Justin SniderStony Brook University Cancer Center, Stony Brook, NY, USA.
Chris CarielloDepartment of Pathology, Stony Brook Renaissance School of Medicine, Stony Brook, NY, USA.
Essa M SaiedChemistry Department, Faculty of Science, Suez Canal University, Ismailia, Egypt.ORCID 0000-0002-7342-6200
Christoph ArenzInstitute for Chemistry, Humboldt Universität zu Berlin, Berlin, Germany.ORCID 0000-0001-7613-9437
Thomas BannisterDepartment of Molecular Medicine, Scripps Research, The Scripps Research Molecular Screening Center, Jupiter, FL, USA.
Ron RahaimDepartment of Molecular Medicine, Scripps Research, The Scripps Research Molecular Screening Center, Jupiter, FL, USA.
Yusuf A HannunDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, NY, USA.
Justin ShumateDepartment of Molecular Medicine, Scripps Research, The Scripps Research Molecular Screening Center, Jupiter, FL, USA.
Louis ScampaviaDepartment of Molecular Medicine, Scripps Research, The Scripps Research Molecular Screening Center, Jupiter, FL, USA.
John D HaleyStony Brook University Cancer Center, Stony Brook, NY, USA.
Timothy P SpicerDepartment of Molecular Medicine, Scripps Research, The Scripps Research Molecular Screening Center, Jupiter, FL, USA.ORCID 0000-0002-9080-4226
Scripps Institution of Oceanography · USStony Brook University · USStony Brook School · USHumboldt-Universität zu Berlin · DESuez Canal University · EG

Funding

Sphingolipids in Cancer Therapy and AngiogenesisP01CA097132 · NCI · STATE UNIVERSITY NEW YORK STONY BROOK · PI YUSUF AWNI HANNUN · 2003 to 2026
$30.8M
Neutral Sphingomyelinases and Bioactive CeramidesR35GM118128 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI HANNUN, YUSUF AWNI · 2016 to 2025
$7.9M
Structure and regulation of lipid metabolism and transportR35GM128666 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI Michael Virgil Airola · 2018 to 2026
$4.0M
Development of neutral ceramidase inhibitor tool compoundsR01CA221948 · NCI · STATE UNIVERSITY NEW YORK STONY BROOK · PI HALEY, JOHN DOUGLAS, SCAMPAVIA, LOUIS DANIEL · 2018 to 2020
$1.3M
Integrated Acoustic Transfer System for HTS Library ManagementS10OD025279 · OD · SCRIPPS FLORIDA · PI SCAMPAVIA, LOUIS DANIEL · 2018 to 2018
$624k
Kinetic Imaging Plate ReaderS10OD025282 · OD · SCRIPPS FLORIDA · PI SPICER, TIMOTHY PATRICK · 2018 to 2018
$540k
HTS Drug  Discovery DispensersS10OD026857 · OD · SCRIPPS FLORIDA · PI SCAMPAVIA, LOUIS DANIEL · 2019 to 2019
$452k
NCI NIH HHS P01 CA097132NCI NIH HHS R01 CA221948NIGMS NIH HHS R35 GM118128NIGMS NIH HHS R35 GM128666NIH HHS S10 OD025279NIH HHS S10 OD025282NIH HHS S10 OD026857
6 · The paper itself

Abstract

There is interest in developing inhibitors of human neutral ceramidase (nCDase) because this enzyme plays a critical role in colon cancer. There are currently no potent or clinically effective inhibitors for nCDase reported to date, so we adapted a fluorescence-based enzyme activity method to a high-throughput screening format. We opted to use an assay whereby nCDase hydrolyzes the substrate RBM 14-16, and the addition of NaIO4 acts as an oxidant that releases umbelliferone, resulting in a fluorescent signal. As designed, test compounds that act as ceramidase inhibitors will prevent the hydrolysis of RBM 14-16, thereby decreasing fluorescence. This assay uses a 1536-well plate format with excitation in the blue spectrum of light energy, which could be a liability, so we incorporated a counterscreen that allows for rapid selection against fluorescence artifacts to minimize false-positive hits. The high-throughput screen of >650,000 small molecules found several lead series of hits. Multiple rounds of chemical optimization ensued with improved potency in terms of IC

Indexed as

High-Throughput Screening AssaysAnimalsCell LineDose-Response Relationship, DrugDrug DiscoveryDrug Screening Assays, AntitumorEnzyme ActivationEnzyme InhibitorsHumansNeutral CeramidaseSmall Molecule LibrariesEnzyme InhibitorsNeutral CeramidaseSmall Molecule Librariescolon cancerfluorescenceHTSneutral ceramidasepharmacological inhibitors

Identifiers

PMID32734807
PMCPMC7749003
OpenAlexW3046758414

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.