Evidence map›Paper›PMID 32734510›Full record

ArticlePlant cell reports2020

Early nodulin 93 protein gene: essential for induction of somatic embryogenesis in oil palm.

Pek-Lan Chan, Ray J Rose, Abdul Munir Abdul Murad, Zamri Zainal, Pei-Wen Ong, Leslie Cheng-Li Ooi, Eng-Ti Leslie Low, Zamzuri Ishak, Suzaini Yahya, Youhong Song and 1 more

Abstract read
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In one paragraph

Article in Plant cell reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.8field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 14 citations in OpenAlex.

  1. Unveiling the Secrets of Oil Palm Genetics: A Look into Omics Research.International journal of molecular sciences · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 4 countries.

Pek-Lan ChanAdvanced Biotechnology and Breeding Centre, Malaysian Palm Oil Board (MPOB), No. 6, Persiaran Institusi, Bandar Baru Bangi, 43000, Kajang, Selangor, Malaysia. chanpl@mpob.gov.my.ORCID http://orcid.org/0000-0003-0466-9169
Ray J RoseSchool of Environmental and Life Sciences, The University of Newcastle, Callaghan, NSW, 2308, Australia.
Abdul Munir Abdul MuradSchool of Biosciences and Biotechnology, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, 43600 UKM, Bangi, Selangor, Malaysia.
Zamri ZainalSchool of Biosciences and Biotechnology, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, 43600 UKM, Bangi, Selangor, Malaysia.
Pei-Wen OngAdvanced Biotechnology and Breeding Centre, Malaysian Palm Oil Board (MPOB), No. 6, Persiaran Institusi, Bandar Baru Bangi, 43000, Kajang, Selangor, Malaysia.
Leslie Cheng-Li OoiAdvanced Biotechnology and Breeding Centre, Malaysian Palm Oil Board (MPOB), No. 6, Persiaran Institusi, Bandar Baru Bangi, 43000, Kajang, Selangor, Malaysia.
Eng-Ti Leslie LowAdvanced Biotechnology and Breeding Centre, Malaysian Palm Oil Board (MPOB), No. 6, Persiaran Institusi, Bandar Baru Bangi, 43000, Kajang, Selangor, Malaysia.
Zamzuri IshakAdvanced Biotechnology and Breeding Centre, Malaysian Palm Oil Board (MPOB), No. 6, Persiaran Institusi, Bandar Baru Bangi, 43000, Kajang, Selangor, Malaysia.
Suzaini YahyaSime Darby Biotech Laboratories Sdn Bhd., Km10, Jalan Banting-Kelanang, P.O. Box 207, 42700, Banting, Selangor, Malaysia.
Youhong SongSchool of Environmental and Life Sciences, The University of Newcastle, Callaghan, NSW, 2308, Australia.
Rajinder SinghAdvanced Biotechnology and Breeding Centre, Malaysian Palm Oil Board (MPOB), No. 6, Persiaran Institusi, Bandar Baru Bangi, 43000, Kajang, Selangor, Malaysia.
Malaysian Palm Oil Board · MYNational University of Malaysia · MYAnhui Agricultural University · CNUniversity of Newcastle Australia · AUUniversity of Selangor · MY

Funding

Malaysian Palm Oil Board (MPOB) internal funding DNA Chip Technology Programme (R000999000)
6 · The paper itself

Abstract

key messageTranscript profiling during the early induction phase of oil palm tissue culture and RNAi studies in a model somatic embryogenesis system showed that EgENOD93 expression is essential for somatic embryogenesis. Micropropagation of oil palm through tissue culture is vital for the generation of superior and uniform elite planting materials. Studies were carried out to identify genes to distinguish between leaf explants with the potential to develop into embryogenic or non-embryogenic callus. Oil palm cDNA microarrays were co-hybridized with cDNA probes of reference tissue, separately with embryo forming (media T527) and non-embryo (media T694) forming leaf explants sampled at Day 7, Day 14 and Day 21. Analysis of the normalized datasets has identified 77, 115 and 127 significantly differentially expressed genes at Day 7, Day 14, and Day 21, respectively. An early nodulin 93 protein gene (ENOD93), was highly expressed at Day 7, Day 14, and Day 21 and in callus (media T527), as assessed by RT-qPCR. Validation of EgENOD93 across tissue culture lines of different genetic background and media composition showed the potential of this gene as an embryogenic marker. In situ RNA hybridization and functional characterization in Medicago truncatula provided additional evidence that ENOD93 is essential for somatic embryogenesis. This study supports the suitability of EgENOD93 as a marker to predict the potential of leaf explants to produce embryogenic callus. Crosstalk among stresses, auxin, and Nod-factor like signalling molecules likely induces the expression of EgENOD93 for embryogenic callus formation.

Indexed as

Plant Somatic Embryogenesis TechniquesArecaceaeCell ProliferationDNA, ComplementaryExpressed Sequence TagsGene Expression ProfilingGene Expression Regulation, PlantMedicago truncatulaMembrane ProteinsPhylogenyPlant CellsPlant LeavesPlant ProteinsPlants, Genetically ModifiedPromoter Regions, GeneticReproducibility of ResultsDNA, ComplementaryMembrane ProteinsnodulinPlant ProteinsTranscription FactorsEarly nodulin 93 protein geneElaeis guineensisMedicago truncatulaMicroarrayNodulationSomatic embryogenesis

Identifiers

PMID32734510
OpenAlexW3045612486

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.