Evidence map›Paper›PMID 32733435›Full record

ArticleFrontiers in immunology2020

Bioinformatics Analysis of Gut Microbiota and CNS Transcriptome in Virus-Induced Acute Myelitis and Chronic Inflammatory Demyelination; Potential Association of Distinct Bacteria With CNS IgA Upregulation.

Seiichi Omura, Fumitaka Sato, Ah-Mee Park, Mitsugu Fujita, Sundar Khadka, Yumina Nakamura, Aoshi Katsuki, Kazuto Nishio, Felicity N E Gavins, Ikuo Tsunoda

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. The Safety ofViruses · 2026
    Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Review
  8. Review
  9. Alteration of the Gut Microbiota in Missed Abortion.Indian journal of microbiology · 2023
    Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 3 countries.

Seiichi OmuraDepartment of Microbiology, Kindai University Faculty of Medicine, Osaka, Japan.
Fumitaka SatoDepartment of Microbiology, Kindai University Faculty of Medicine, Osaka, Japan.
Ah-Mee ParkDepartment of Microbiology, Kindai University Faculty of Medicine, Osaka, Japan.
Mitsugu FujitaDepartment of Microbiology, Kindai University Faculty of Medicine, Osaka, Japan.
Sundar KhadkaDepartment of Microbiology, Kindai University Faculty of Medicine, Osaka, Japan.
Yumina NakamuraDepartment of Microbiology, Kindai University Faculty of Medicine, Osaka, Japan.
Aoshi KatsukiDepartment of Microbiology, Kindai University Faculty of Medicine, Osaka, Japan.
Kazuto NishioDepartment of Genome Biology, Kindai University Faculty of Medicine, Osaka, Japan.
Felicity N E GavinsDepartment of Molecular and Cellular Physiology, Louisiana State University Health Sciences Center-Shreveport, Shreveport, LA, United States.
Ikuo TsunodaDepartment of Microbiology, Kindai University Faculty of Medicine, Osaka, Japan.
Kindai University · JPLouisiana State University Health Sciences Center Shreveport · US

Funding

COBRE Center for Molecular and Tumor VirologyP20GM103433 · NIGMS · LOUISIANA STATE UNIV HSC SHREVEPORT · PI O'CALLAGHAN, DENNIS JOHN · 2012 to 2012
$1.9M
NIGMS NIH HHS P20 GM103433
6 · The paper itself

Abstract

Virus infections have been associated with acute and chronic inflammatory central nervous system (CNS) diseases, e.g., acute flaccid myelitis (AFM) and multiple sclerosis (MS), where animal models support the pathogenic roles of viruses. In the spinal cord, Theiler's murine encephalomyelitis virus (TMEV) induces an AFM-like disease with gray matter inflammation during the acute phase, 1 week post infection (p.i.), and an MS-like disease with white matter inflammation during the chronic phase, 1 month p.i. Although gut microbiota has been proposed to affect immune responses contributing to pathological conditions in remote organs, including the brain pathophysiology, its precise role in neuroinflammatory diseases is unclear. We infected SJL/J mice with TMEV; harvested feces and spinal cords on days 4 (before onset), 7 (acute phase), and 35 (chronic phase) p.i.; and examined fecal microbiota by 16S rRNA sequencing and CNS transcriptome by RNA sequencing. Although TMEV infection neither decreased microbial diversity nor changed overall microbiome patterns, it increased abundance of individual bacterial genera

Indexed as

Gastrointestinal MicrobiomeAnimalsCardiovirus InfectionsCentral Nervous System Viral DiseasesChronic DiseaseComputational BiologyDemyelinating Autoimmune Diseases, CNSImmunoglobulin AMiceMyelitisNeuromuscular DiseasesTheilovirusTranscriptomeUp-RegulationImmunoglobulin Adysbiosisfecal microbiomegene expression profilespattern matchingPICRUStpredictive metagenome analysisRNA-Seqviral model for multiple sclerosis

Identifiers

PMID32733435
PMCPMC7358278
OpenAlexW3040019947

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.