Evidence map›Paper›PMID 32733036›Full record

ArticleNature communications2020

Functional 3D architecture in an intrinsically disordered E3 ligase domain facilitates ubiquitin transfer.

Paul Murphy, Yingqi Xu, Sarah L Rouse, Ellis G Jaffray, Anna Plechanovová, Steve J Matthews, J Carlos Penedo, Ronald T Hay

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. E3 Ubiquitin Ligase SPL2 Is a Lanthanide-Binding Protein.International journal of molecular sciences · 2021
    Article
  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Paul MurphyCentre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, DD1 5EH, Dundee, UK.
Yingqi XuCentre for Structural Biology, Department of Life Sciences, Imperial College London, SW7 2AZ, London, UK.
Sarah L RouseCentre for Structural Biology, Department of Life Sciences, Imperial College London, SW7 2AZ, London, UK.
Ellis G JaffrayCentre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, DD1 5EH, Dundee, UK.
Anna PlechanovováCentre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, DD1 5EH, Dundee, UK.
Steve J MatthewsCentre for Structural Biology, Department of Life Sciences, Imperial College London, SW7 2AZ, London, UK.ORCID http://orcid.org/0000-0003-0676-0927
J Carlos PenedoCentre of Biophotonics, School of Physics and Astronomy, University of St. Andrews, KY16 9SS, St. Andrews, UK.ORCID http://orcid.org/0000-0002-5807-5385
Ronald T HayCentre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, DD1 5EH, Dundee, UK. r.t.hay@dundee.ac.uk.ORCID http://orcid.org/0000-0001-7113-9024
University of Dundee · GBImperial College London · GBUniversity of St Andrews · GB

Funding

Cancer Research UK 21747Cancer Research UK C434/A21747Medical Research Council MR/P028225/1The Dunhill Medical Trust R438/0715Wellcome TrustWellcome Trust 098391/Z/12/ZWellcome Trust 104833Wellcome Trust 109113/Z/15/ZWellcome Trust 215539Wellcome Trust 217196/Z/19/Z
6 · The paper itself

Abstract

The human genome contains an estimated 600 ubiquitin E3 ligases, many of which are single-subunit E3s (ssE3s) that can bind to both substrate and ubiquitin-loaded E2 (E2~Ub). Within ssE3s structural disorder tends to be located in substrate binding and domain linking regions. RNF4 is a ssE3 ligase with a C-terminal RING domain and disordered N-terminal region containing SUMO Interactions Motifs (SIMs) required to bind SUMO modified substrates. Here we show that, although the N-terminal region of RNF4 bears no secondary structure, it maintains a compact global architecture primed for SUMO interaction. Segregated charged regions within the RNF4 N-terminus promote compaction, juxtaposing RING domain and SIMs to facilitate substrate ubiquitination. Mutations that induce a more extended shape reduce ubiquitination activity. Our result offer insight into a key step in substrate ubiquitination by a member of the largest ubiquitin ligase subtype and reveal how a defined architecture within a disordered region contributes to E3 ligase function.

Indexed as

HumansIntrinsically Disordered ProteinsNuclear ProteinsProtein BindingProtein DomainsSmall Ubiquitin-Related Modifier ProteinsTranscription FactorsUbiquitinationUbiquitin-Protein LigasesIntrinsically Disordered ProteinsNuclear ProteinsRNF4 protein, humanSmall Ubiquitin-Related Modifier ProteinsTranscription FactorsUbiquitin-Protein Ligases

Identifiers

PMID32733036
PMCPMC7393505
OpenAlexW3046071152

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.