Evidence map›Paper›PMID 32731586›Full record

ArticleViruses2020

Host Transcriptional Response to Persistent Infection with a Live-Attenuated Porcine Reproductive and Respiratory Syndrome Virus Strain.

Jayeshbhai Chaudhari, Chia-Sin Liew, Aspen M Workman, Jean-Jack M Riethoven, David Steffen, Sarah Sillman, Hiep L X Vu

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.9field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Jayeshbhai ChaudhariNebraska Center for Virology, University of Nebraska-Lincoln, Lincoln, NE 68583, USA.ORCID 0000-0002-1864-562X
Chia-Sin LiewCenter for Biotechnology, University of Nebraska-Lincoln, Lincoln, NE 68588, USA.
Aspen M WorkmanUSDA, ARS, U.S. Meat Animal Research Center, Clay Center, NE 68933, USA.ORCID 0000-0003-2852-3519
Jean-Jack M RiethovenCenter for Biotechnology, University of Nebraska-Lincoln, Lincoln, NE 68588, USA.ORCID 0000-0002-2709-7880
David SteffenSchool of Veterinary Medicine and Biomedical Sciences, University of Nebraska-Lincoln, Lincoln, NE 68583, USA.ORCID 0000-0002-5166-2296
Sarah SillmanSchool of Veterinary Medicine and Biomedical Sciences, University of Nebraska-Lincoln, Lincoln, NE 68583, USA.
Hiep L X VuNebraska Center for Virology, University of Nebraska-Lincoln, Lincoln, NE 68583, USA.ORCID 0000-0001-8084-4358
University of Nebraska–Lincoln · USRoman L. Hruska U.S. Meat Animal Research Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Both virulent and live-attenuated porcine reproductive and respiratory syndrome virus (PRRSV) strains can establish persistent infection in lymphoid tissues of pigs. To investigate the mechanisms of PRRSV persistence, we performed a transcriptional analysis of inguinal lymphoid tissue collected from pigs experimentally infected with an attenuated PRRSV strain at 46 days post infection. A total of 6404 differentially expressed genes (DEGs) were detected of which 3960 DEGs were upregulated and 2444 DEGs were downregulated. Specifically, genes involved in innate immune responses and chemokines and receptors associated with T-cell homing to lymphoid tissues were down regulated. As a result, homing of virus-specific T-cells to lymphoid tissues seems to be ineffective, evidenced by the lower frequencies of virus-specific T-cell in lymphoid tissue than in peripheral blood. Genes associated with T-cell exhaustion were upregulated. Likewise, genes involved in the anti-apoptotic pathway were upregulated. Collectively, the data suggested that the live-attenuated PRRSV strain establishes a pro-survival microenvironment in lymphoid tissue by suppressing innate immune responses, T-cell homing, and preventing cell apoptosis.

Indexed as

Gene Expression ProfilingAnimalsApoptosisHost Microbial InteractionsImmunity, InnateLymphoid TissuePorcine Reproductive and Respiratory SyndromePorcine respiratory and reproductive syndrome virusSwineT-Lymphocytesapoptosispersistent infectionPRRSVRNA-sequencingT-cell exhaustiontranscriptome

Identifiers

PMID32731586
PMCPMC7474429
OpenAlexW3045693155

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.