Evidence map›Paper›PMID 32730791›Full record

ArticleBiophysical journal2020

Tautomeric Effect of Histidine on β-Sheet Formation of Amyloid Beta 1-40: 2D-IR Simulations.

Yeonsig Nam, Mahroof Kalathingal, Shinji Saito, Jin Yong Lee

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.0field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 19 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Yeonsig NamDepartment of Chemistry, Sungkyunkwan University, Suwon, Korea; Institute for Molecular Science, Myodaiji, Okazaki, Japan.
Mahroof KalathingalThe Graduate University for Advanced Studies, Myodaiji, Okazaki, Japan.
Shinji SaitoInstitute for Molecular Science, Myodaiji, Okazaki, Japan; The Graduate University for Advanced Studies, Myodaiji, Okazaki, Japan. Electronic address: shinji@ims.ac.jp.
Jin Yong LeeDepartment of Chemistry, Sungkyunkwan University, Suwon, Korea. Electronic address: jinylee@skku.edu.
The Graduate University for Advanced Studies, SOKENDAI · JPInstitute for Molecular Science · JPSungkyunkwan University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Histidine state (protonated or δ or ε tautomer) has been considered the origin of abnormal misfolding and aggregation of β-amyloid (Aβ). Our previous studies reported that the δδδ isomer of Aβ (1-40) has a greater propensity for β-sheet conformation compared to other isomers. However, direct proof of the tautomeric effect has not been reported. In this context, we calculated histidine site-specific two-dimensional infrared spectroscopy of the δδδ, εεε, and πππ (all protonated histidine) systems within the framework of classical molecular dynamics simulations aiming at connecting our previous results with the current experimental observations. Our results showed that β-sheet formation is favored for the δδδ and πππ tautomers compared with the εεε tautomer, consistent with our previous studies. This result was further supported by contact map analyses and the strength of dipole coupling between the amide-I bonds of each residue. The two-dimensional infrared diagonal trace for each tautomer included three distinctive spectrally resolvable peaks near 1680, 1686, and 1693 cm

Indexed as

Amyloid beta-PeptidesHistidineAmyloidMolecular Dynamics SimulationProtein Conformation, beta-StrandAmyloidAmyloid beta-PeptidesHistidine

Identifiers

PMID32730791
PMCPMC7451942
OpenAlexW3043698333

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.