Evidence map›Paper›PMID 32730217›Full record

ArticleJournal of medical Internet research2020

Real-Time Forecasting of the COVID-19 Outbreak in Chinese Provinces: Machine Learning Approach Using Novel Digital Data and Estimates From Mechanistic Models.

Dianbo Liu, Leonardo Clemente, Canelle Poirier, Xiyu Ding, Matteo Chinazzi, Jessica Davis, Alessandro Vespignani, Mauricio Santillana

Erratum issuedAbstract read
In one paragraph

Article in Journal of medical Internet research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 26 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 2 syntheses or guidelines pooled it.

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  9. Editorial: Infectious Disease Surveillance Using Artificial Intelligence (AI) and its Role in Epidemic and Pandemic Preparedness.Medical science monitor : international medical journal of experimental and clinical research · 2023
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Dianbo Liu *Computational Health Informatics Program, Boston Children's Hospital, Boston, MA, United States.ORCID https://orcid.org/0000-0002-3042-9161
Leonardo Clemente *Computational Health Informatics Program, Boston Children's Hospital, Boston, MA, United States.ORCID https://orcid.org/0000-0001-8939-8841
Canelle Poirier *Computational Health Informatics Program, Boston Children's Hospital, Boston, MA, United States.ORCID https://orcid.org/0000-0002-6972-2621
Xiyu DingComputational Health Informatics Program, Boston Children's Hospital, Boston, MA, United States.ORCID https://orcid.org/0000-0001-6852-2962
Matteo ChinazziLaboratory for the Modeling of Biological and Socio-technical Systems, Northeastern University, Boston, MA, United States.ORCID https://orcid.org/0000-0002-5955-1929
Jessica DavisLaboratory for the Modeling of Biological and Socio-technical Systems, Northeastern University, Boston, MA, United States.ORCID https://orcid.org/0000-0003-0726-1855
Alessandro VespignaniLaboratory for the Modeling of Biological and Socio-technical Systems, Northeastern University, Boston, MA, United States.ORCID https://orcid.org/0000-0003-3419-4205
Mauricio SantillanaComputational Health Informatics Program, Boston Children's Hospital, Boston, MA, United States.ORCID https://orcid.org/0000-0002-4206-418X

Funding

Development of an Open-Source and Data-Driven Modeling Platform to Monitor and Forecast Disease ActivityR01GM130668 · NIGMS · NORTHEASTERN UNIVERSITY · PI SANTILLANA, MAURICIO · 2018 to 2022
$1.9M
NIGMS NIH HHS R01 GM130668
6 · The paper itself

Abstract

backgroundThe inherent difficulty of identifying and monitoring emerging outbreaks caused by novel pathogens can lead to their rapid spread; and if left unchecked, they may become major public health threats to the planet. The ongoing coronavirus disease (COVID-19) outbreak, which has infected over 2,300,000 individuals and caused over 150,000 deaths, is an example of one of these catastrophic events.

objectiveWe present a timely and novel methodology that combines disease estimates from mechanistic models and digital traces, via interpretable machine learning methodologies, to reliably forecast COVID-19 activity in Chinese provinces in real time.

methodsOur method uses the following as inputs: (a) official health reports, (b) COVID-19-related internet search activity, (c) news media activity, and (d) daily forecasts of COVID-19 activity from a metapopulation mechanistic model. Our machine learning methodology uses a clustering technique that enables the exploitation of geospatial synchronicities of COVID-19 activity across Chinese provinces and a data augmentation technique to deal with the small number of historical disease observations characteristic of emerging outbreaks.

resultsOur model is able to produce stable and accurate forecasts 2 days ahead of the current time and outperforms a collection of baseline models in 27 out of 32 Chinese provinces.

conclusionsOur methodology could be easily extended to other geographies currently affected by COVID-19 to aid decision makers with monitoring and possibly prevention.

Indexed as

Data AnalysisMachine LearningModels, BiologicalChinaCoronavirus InfectionsCOVID-19Disease OutbreaksForecastingHumansInternetMass MediaModels, StatisticalPandemicsPneumonia, ViralPublic HealthcoronavirusCOVID-19digital datadigital epidemiologyemerging outbreakforecastinghybrid modelhybrid simulationmachine learningmachine learning in public healthmechanistic modelmodelingmodeling disease outbreaksprecision public healthsimulation

Identifiers

PMID32730217
PMCPMC7459435

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.