Evidence map›Paper›PMID 32729827›Full record

ArticleeLife2020

An atlas of cell types in the mouse epididymis and vas deferens.

Vera D Rinaldi, Elisa Donnard, Kyle Gellatly, Morten Rasmussen, Alper Kucukural, Onur Yukselen, Manuel Garber, Upasna Sharma, Oliver J Rando

Open access · goldAbstract read
In one paragraph

Article in eLife, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed, 1 pooled it
14.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 1 synthesis or guideline pooled it, 116 citations in OpenAlex.

  1. Pooled it
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  14. Innate Antiviral Defense of the Male Reproductive System.Advances in experimental medicine and biology · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Vera D Rinaldi *Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, United States.ORCID 0000-0002-0051-1754
Elisa Donnard *Department of Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, United States.ORCID 0000-0002-8834-8110
Kyle GellatlyDepartment of Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, United States.
Morten RasmussenDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, United States.
Alper KucukuralDepartment of Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, United States.ORCID 0000-0001-9983-394X
Onur YukselenDepartment of Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, United States.
Manuel GarberDepartment of Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, United States.ORCID 0000-0001-8732-1293
Upasna SharmaDepartment of Molecular, Cell and Developmental Biology, University of California Santa Cruz, Santa Cruz, United States.
Oliver J RandoDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, United States.ORCID 0000-0003-1516-9397
University of Massachusetts Chan Medical School · USStatens Serum Institut · DKUniversity of California, Santa Cruz · US

Funding

University of Massachusetts Center for Clinical Science and Translational SupplementUL1TR001453 · NCATS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI LUZURIAGA, KATHERINE F · 2015 to 2024
$39.0M
Dietary effects on the sperm epigenomeR01HD080224 · NICHD · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI RANDO, OLIVER J · 2014 to 2022
$5.9M
Paternal contributions to offspring health: Intergenerational epigenetic inheritance via sperm small RNAsDP2AG066622 · NIA · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI SHARMA, UPASNA · 2019 to 2019
$2.3M
A Light Sheet Microscope for the Cornell BRC Imaging FacilityS10OD023466 · OD · CORNELL UNIVERSITY · PI WILLIAMS, REBECCA M · 2017 to 2017
$364k
John Templeton Foundation 61350NCATS NIH HHS UL1 TR001453NIA NIH HHS DP2 AG066622NICHD NIH HHS R01 HD080224NIH HHS S10 OD023466
6 · The paper itself

Abstract

Following testicular spermatogenesis, mammalian sperm continue to mature in a long epithelial tube known as the epididymis, which plays key roles in remodeling sperm protein, lipid, and RNA composition. To understand the roles for the epididymis in reproductive biology, we generated a single-cell atlas of the murine epididymis and vas deferens. We recovered key epithelial cell types including principal cells, clear cells, and basal cells, along with associated support cells that include fibroblasts, smooth muscle, macrophages and other immune cells. Moreover, our data illuminate extensive regional specialization of principal cell populations across the length of the epididymis. In addition to region-specific specialization of principal cells, we find evidence for functionally specialized subpopulations of stromal cells, and, most notably, two distinct populations of clear cells. Our dataset extends on existing knowledge of epididymal biology, and provides a wealth of information on potential regulatory and signaling factors that bear future investigation.

Indexed as

AnimalsEpididymisMaleMiceSingle-Cell AnalysisVas Deferensdevelopmentdevelopmental biologygeneticsgenomicsmousereproductionsperm maturation

Identifiers

PMID32729827
PMCPMC7426093
OpenAlexW3047438701

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.