Evidence map›Paper›PMID 32729510›Full record

ArticleBiosensors & bioelectronics2020

Cascade of deoxyribozymes for the colorimetric analysis of drug resistance in Mycobacterium tuberculosis.

Bidhan C Dhar, Adam J Reed, Suvra Mitra, Patricia Rodriguez Sanchez, Daria D Nedorezova, Ryan P Connelly, Kyle H Rohde, Yulia V Gerasimova

Open access · greenAbstract read
In one paragraph

Article in Biosensors & bioelectronics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.9field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Review
  6. Biosensing with DNAzymes.Chemical Society reviews · 2021
    Review
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Bidhan C DharChemistry Department, University of Central Florida, 4111 Libra Dr., Orlando, FL, 32816, USA.
Adam J ReedChemistry Department, University of Central Florida, 4111 Libra Dr., Orlando, FL, 32816, USA.
Suvra MitraChemistry Department, University of Central Florida, 4111 Libra Dr., Orlando, FL, 32816, USA.
Patricia Rodriguez SanchezChemistry Department, University of Central Florida, 4111 Libra Dr., Orlando, FL, 32816, USA.
Daria D NedorezovaChemistry Department, University of Central Florida, 4111 Libra Dr., Orlando, FL, 32816, USA.
Ryan P ConnellyChemistry Department, University of Central Florida, 4111 Libra Dr., Orlando, FL, 32816, USA.
Kyle H RohdeDivision of Immunity and Pathogenesis, Burnett School of Biomedical Sciences, College of Medicine, University of Central Florida, 6900 Lake Nona Blvd, Orlando, FL, 32827, USA.
Yulia V GerasimovaChemistry Department, University of Central Florida, 4111 Libra Dr., Orlando, FL, 32816, USA. Electronic address: Yulia.gerasimova@ucf.edu.
University of Central Florida · US

Funding

Development of a method for visual detection of Mycobacterium tuberculosis complexR21AI123876 · NIAID · UNIVERSITY OF CENTRAL FLORIDA · PI GERASIMOVA, YULIA, ROHDE, KYLE H · 2017 to 2018
$383k
NIAID NIH HHS R21 AI123876
6 · The paper itself

Abstract

A visual cascade detection system has been applied to the detection and analysis of drug-resistance profile of Mycobacterium tuberculosis complex (MTC), a causative agent of tuberculosis. The cascade system utilizes highly selective split RNA-cleaving deoxyribozyme (sDz) sensors. When activated by a complementary nucleic acid, sDz releases the peroxidase-like deoxyribozyme apoenzyme, which, in complex with a hemin cofactor, catalyzes the color change of the sample's solution. The excellent selectivity of the cascade has allowed for the detection of point mutations in the sequences of the MTC rpoB, katG, and gyrA genes, which are responsible for resistance to rifampin, isoniazid, and fluoroquinolone, respectively. When combined with isothermal nucleic acid sequence based amplification (NASBA), the assay was able to detect amplicons of 16S rRNA and katG mRNA generated from 0.1 pg and 10 pg total RNA taken for NASBA, respectively, in less than 2 h, producing a signal detectable with the naked eye. The proposed assay may become a prototype for point-of-care diagnosis of drug resistant bacteria with visual signal output.

Indexed as

Biosensing TechniquesDNA, CatalyticMycobacterium tuberculosisAntitubercular AgentsBacterial ProteinsColorimetryDNA-Directed RNA PolymerasesDrug ResistanceIsoniazidMicrobial Sensitivity TestsMutationRNA, Ribosomal, 16SAntitubercular AgentsBacterial ProteinsDNA, CatalyticDNA-Directed RNA PolymerasesIsoniazidRNA, Ribosomal, 16SDeoxyribozyme cascadeDrug susceptibility testingMycobacterium tuberculosisNucleic acid sequence-based amplification (NASBA)Point mutationsVisual assay

Identifiers

PMID32729510
PMCPMC7484165
OpenAlexW3035537557

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.