Evidence map›Paper›PMID 32729223›Full record

ArticleMicrobial biotechnology2020

Elevated intracellular cyclic-di-GMP level in Shewanella oneidensis increases expression of c-type cytochromes.

Chun Kiat Ng, Jiabao Xu, Zhao Cai, Liang Yang, Ian P Thompson, Wei E Huang, Bin Cao

Open access · goldAbstract read
In one paragraph

Article in Microbial biotechnology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 33 citations in OpenAlex.

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  10. Biofilm Biology and Engineering ofFrontiers in bioengineering and biotechnology · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Chun Kiat NgDepartment of Engineering Science, University of Oxford, Parks Road, Oxford, OX1 3PJ, UK.ORCID 0000-0002-1723-9988
Jiabao XuDepartment of Engineering Science, University of Oxford, Parks Road, Oxford, OX1 3PJ, UK.ORCID 0000-0002-1285-9408
Zhao CaiSingapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, Singapore City, Singapore.
Liang YangSingapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, Singapore City, Singapore.ORCID 0000-0002-2362-0128
Ian P ThompsonDepartment of Engineering Science, University of Oxford, Parks Road, Oxford, OX1 3PJ, UK.
Wei E HuangDepartment of Engineering Science, University of Oxford, Parks Road, Oxford, OX1 3PJ, UK.ORCID 0000-0003-1302-6528
Bin CaoSingapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, Singapore City, Singapore.ORCID 0000-0002-9462-496X
Nanyang Technological University · SGUniversity of Oxford · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Electrochemically active biofilms are capable of exchanging electrons with solid electron acceptors and have many energy and environmental applications such as bioelectricity generation and environmental remediation. The performance of electrochemically active biofilms is usually dependent on c-type cytochromes, while biofilm development is controlled by a signal cascade mediated by the intracellular secondary messenger bis-(3'-5') cyclic dimeric guanosine monophosphate (c-di-GMP). However, it is unclear whether there are any links between the c-di-GMP regulatory system and the expression of c-type cytochromes. In this study, we constructed a S. oneidensis MR-1 strain with a higher cytoplasmic c-di-GMP level by constitutively expressing a c-di-GMP synthase and it exhibited expected c-di-GMP-influenced traits, such as lowered motility and increased biofilm formation. Compared to MR-1 wild-type strain, the high c-di-GMP strain had a higher Fe(III) reduction rate (21.58 vs 11.88 pM of Fe(III)/h cell) and greater expression of genes that code for the proteins involved in the Mtr pathway, including CymA, MtrA, MtrB, MtrC and OmcA. Furthermore, single-cell Raman microspectroscopy (SCRM) revealed a great increase of c-type cytochromes in the high c-di-GMP strain as compared to MR-1 wild-type strain. Our results reveal for the first time that the c-di-GMP regulation system indirectly or directly positively regulates the expression of cytochromes involved in the extracellular electron transport (EET) in S. oneidensis, which would help to understand the regulatory mechanism of c-di-GMP on electricity production in bacteria.

Indexed as

Ferric CompoundsShewanellaBacterial ProteinsBiofilmsCyclic GMPCytochromesGene Expression Regulation, BacterialBacterial Proteinsbis(3',5')-cyclic diguanylic acidCyclic GMPCytochromesFerric Compounds

Identifiers

PMID32729223
PMCPMC7533324
OpenAlexW3046025853

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.