Evidence map›Paper›PMID 32729077›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2021

Quantitative Analysis of Adenosine-to-Inosine RNA Editing.

Turnee N Malik, Jean-Philippe Cartailler, Ronald B Emeson

Open access · greenAbstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
3.5field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Long Non-Coding RNA Epigenetics.International journal of molecular sciences · 2021
    Review
  6. Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Turnee N MalikTraining Program in Neuroscience, Vanderbilt University School of Medicine, Nashville, TN, USA.
Jean-Philippe CartaillerDepartment of Molecular Physiology & Biophysics, Vanderbilt University School of Medicine, Nashville, TN, USA.
Ronald B EmesonTraining Program in Neuroscience, Vanderbilt University School of Medicine, Nashville, TN, USA. ron.emeson@vanderbilt.edu.
Vanderbilt University · US

Funding

Tumor Immunology and Microenvironment Research ProgramP30CA068485 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI STACIE B DUSETZINA · 1995 to 2026
$172.8M
Shop Module CoreP30EY008126 · NEI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI David J. Calkins · 1989 to 2026
$19.6M
Overall: Eunice Kennedy Shriver Intellectual and Developmental Disabilities Research Center at VanderbiltP50HD103537 · NICHD · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Jeffrey L Neul · 2020 to 2026
$10.3M
VANTAGE:Consolidation to create the Vanderbilt Technologies for Advanced GenomicsG20RR030956 · NCRR · VANDERBILT UNIVERSITY · PI PIETENPOL, JENNIFER A · 2010 to 2010
$8.7M
Cell-specific Modulation of Feeding Behavior by Serotonin 2C Receptor RNA ProcessingR01DK119508 · NIDDK · VANDERBILT UNIVERSITY · PI EMESON, RONALD B. · 2019 to 2022
$1.6M
NCI NIH HHS P30 CA068485NCRR NIH HHS G20 RR030956NEI NIH HHS P30 EY008126NICHD NIH HHS P50 HD103537NIDDK NIH HHS R01 DK119508
6 · The paper itself

Abstract

The conversion of adenosine to inosine (A to I) by RNA editing represents a common posttranscriptional mechanism for diversification of both the transcriptome and proteome, and is a part of the cellular response for innate immune tolerance. Due to its preferential base-pairing with cytosine (C), inosine (I) is recognized as guanosine (G) by reverse transcriptase, as well as the cellular splicing and translation machinery. A-to-I editing events appear as A-G discrepancies between genomic DNA and cDNA sequences. Molecular analyses of RNA editing have leveraged these nucleoside differences to quantify RNA editing in ensemble populations of RNA transcripts and within individual cDNAs using high-throughput sequencing or Sanger sequencing-derived analysis of electropherogram peak heights. Here, we briefly review and compare these methods of RNA editing quantification, as well as provide experimental protocols by which such analyses may be achieved.

Indexed as

TranscriptomeAdenosineDNA, ComplementaryGenome, HumanHigh-Throughput Nucleotide SequencingHumansInosineRNA EditingAdenosineDNA, ComplementaryInosineElectropherogramHigh-throughput sequencingIlluminaPosttranscriptional modificationsRNA processingSanger sequencing

Identifiers

PMID32729077
PMCPMC8208106
OpenAlexW3046215454

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.