Evidence map›Paper›PMID 32728807›Full record

ReviewHuman genetics2021

Overview of PAX gene family: analysis of human tissue-specific variant expression and involvement in human disease.

Brian Thompson, Emily A Davidson, Wei Liu, Daniel W Nebert, Elspeth A Bruford, Hongyu Zhao, Emmanouil T Dermitzakis, David C Thompson, Vasilis Vasiliou

Open access · greenAbstract readReview
In one paragraph

Review in Human genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
  2. Article
  3. Epigenetic, Genetic, and Functional Germline Alterations ofCurrent issues in molecular biology · 2026
    Review
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. PAX Family, Master Regulator in Cancer.Diagnostics (Basel, Switzerland) · 2025
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. The Role of the PAX Genes in Renal Cell Carcinoma.International journal of molecular sciences · 2024
    Review
  17. Article
  18. Article
  19. Review
  20. Spotting the Pattern: A Review on White Coat Color in the Domestic Horse.Animals : an open access journal from MDPI · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 4 countries.

Brian ThompsonDepartment of Environmental Health Sciences, Yale School of Public Health, 60 College Street, New Haven, CT, 06510, USA.
Emily A DavidsonDepartment of Environmental Health Sciences, Yale School of Public Health, 60 College Street, New Haven, CT, 06510, USA.
Wei LiuProgram of Computational Biology and Bioinformatics, Yale University, New Haven, CT, 06510, USA.
Daniel W NebertDepartment of Environmental Health and Center for Environmental Genetics, Cincinnati Children's Research Center, University of Cincinnati Medical Center, Cincinnati, OH, 45267, USA.
Elspeth A BrufordHUGO Gene Nomenclature Committee, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SD, UK.
Hongyu ZhaoProgram of Computational Biology and Bioinformatics, Yale University, New Haven, CT, 06510, USA.
Emmanouil T DermitzakisDepartment of Genetic Medicine and Development, University of Geneva Medical School, 1211, Geneva, Switzerland.
David C ThompsonDepartment of Clinical Pharmacy, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of Colorado Denver, Aurora, CO, 80045, USA.
Vasilis VasiliouDepartment of Environmental Health Sciences, Yale School of Public Health, 60 College Street, New Haven, CT, 06510, USA. vasilis.vasiliou@yale.edu.ORCID http://orcid.org/0000-0003-2552-3118
Yale University · USCincinnati Children's Hospital Medical Center · USEuropean Bioinformatics Institute · GBUniversity of Geneva · CHUniversity of Montana · US

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
REPRODUCTIVE AND DEVELOPMENTAL TOXICOLOGY RESEARCHP30ES006096 · NIEHS · UNIVERSITY OF CINCINNATI · PI PINNEY, SUSAN MENGEL · 1992 to 2022
$35.4M
NRSA Training CoreTL1TR001864 · NCATS · YALE UNIVERSITY · PI CANTLEY, LLOYD G, EDELMAN, E. JENNIFER · 2016 to 2025
$9.9M
Mouse Models for Alcohol Metabolism and Tissue InjuryR24AA022057 · NIAAA · YALE UNIVERSITY · PI VASILIOU, VASILIS · 2013 to 2022
$4.5M
The Nomenclature of Human and Vertebrate GenesU24HG003345 · NHGRI · UNIVERSITY OF CAMBRIDGE · PI Elspeth Bruford · 2018 to 2026
$3.9M
Novel Role of Corneal Crystallins as Modulators of Cell Growth and TransparencyR01EY017963 · NEI · YALE UNIVERSITY · PI VASILIOU, VASILIS · 2007 to 2019
$3.7M
The role of ALDH1B1 in ethanol metabolism and colon cancerU01AA021724 · NIAAA · YALE UNIVERSITY · PI VASILIOU, VASILIS · 2014 to 2017
$1.7M
Visual Science Training GrantT32EY022312 · NEI · YALE UNIVERSITY · PI ZHOU, Z JIMMY · 2012 to 2021
$1.3M
Identification of Biomarkers and Novel Pathways of Alcoholic Liver Disease by Leveraging Metabolomics, Tissue Imaging Mass Spectrometry, and Integrative Machine LearningR21AA028432 · NIAAA · YALE UNIVERSITY · PI VASILIOU, VASILIS · 2020 to 2021
$680k
The role of ALDH1B1 in ethanol metabolism and colon cancerR01AA021724 · NIAAA · YALE UNIVERSITY · PI VASILIOU, VASILIS · 2018 to 2018
$397k
NCATS NIH HHS TL1 TR001864NCATS NIH HHS UL1 TR001863NEI NIH HHS EY017963NEI NIH HHS EY022312NEI NIH HHS R01 EY017963NEI NIH HHS T32 EY022312NHGRI NIH HHS U24 HG003345NHGRI NIH HHS U24HG003345NIAAA NIH HHS AA021724NIAAA NIH HHS AA022057NIAAA NIH HHS R01 AA021724NIAAA NIH HHS R21 AA028432NIAAA NIH HHS R24 AA022057NIAAA NIH HHS U01 AA021724NIEHS NIH HHS P30 ES006096NIEHS NIH HHS P30 ES06096Wellcome TrustWellcome Trust 208349/Z/17/Z
6 · The paper itself

Abstract

Paired-box (PAX) genes encode a family of highly conserved transcription factors found in vertebrates and invertebrates. PAX proteins are defined by the presence of a paired domain that is evolutionarily conserved across phylogenies. Inclusion of a homeodomain and/or an octapeptide linker subdivides PAX proteins into four groups. Often termed "master regulators", PAX proteins orchestrate tissue and organ development throughout cell differentiation and lineage determination, and are essential for tissue structure and function through maintenance of cell identity. Mutations in PAX genes are associated with myriad human diseases (e.g., microphthalmia, anophthalmia, coloboma, hypothyroidism, acute lymphoblastic leukemia). Transcriptional regulation by PAX proteins is, in part, modulated by expression of alternatively spliced transcripts. Herein, we provide a genomics update on the nine human PAX family members and PAX homologs in 16 additional species. We also present a comprehensive summary of human tissue-specific PAX transcript variant expression and describe potential functional significance of PAX isoforms. While the functional roles of PAX proteins in developmental diseases and cancer are well characterized, much remains to be understood regarding the functional roles of PAX isoforms in human health. We anticipate the analysis of tissue-specific PAX transcript variant expression presented herein can serve as a starting point for such research endeavors.

Indexed as

Genetic Predisposition to DiseaseAlternative SplicingAnimalsChromosome MappingEvolution, MolecularHumansPaired Box Transcription FactorsPhylogenyRNA, MessengerTranscription, GeneticPaired Box Transcription FactorsRNA, Messenger

Identifiers

PMID32728807
PMCPMC7939107
OpenAlexW3046042106

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.