Evidence map›Paper›PMID 32728244›Full record

ArticleNature2020

Occupancy maps of 208 chromatin-associated proteins in one human cell type.

E Christopher Partridge, Surya B Chhetri, Jeremy W Prokop, Ryne C Ramaker, Camden S Jansen, Say-Tar Goh, Mark Mackiewicz, Kimberly M Newberry, Laurel A Brandsmeier, Sarah K Meadows and 10 more

Open access · hybridAbstract read
In one paragraph

Article in Nature, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 99 papers.

0numbers the graph read from it
0cells of the map it votes in
99citing papers in PubMed
10.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

99 citing papers in PubMed, 169 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. The Encyclopedia of DNA Elements.bioRxiv : the preprint server for biology · 2026
    Article
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  8. Article
  9. Epithelial sensing of vitamin A shapes intestinal antimicrobial defense.bioRxiv : the preprint server for biology · 2026
    Article
  10. Article
  11. Article
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  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article

39 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 6 institutions in 1 country.

E Christopher Partridge *HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA.
Surya B Chhetri *HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA.
Jeremy W ProkopHudsonAlpha Institute for Biotechnology, Huntsville, AL, USA.
Ryne C RamakerHudsonAlpha Institute for Biotechnology, Huntsville, AL, USA.
Camden S JansenDepartment of Developmental and Cell Biology, University of California Irvine, Irvine, CA, USA.
Say-Tar GohDivision of Biology, California Institute of Technology, Pasadena, CA, USA.
Mark MackiewiczHudsonAlpha Institute for Biotechnology, Huntsville, AL, USA.
Kimberly M NewberryHudsonAlpha Institute for Biotechnology, Huntsville, AL, USA.
Laurel A BrandsmeierHudsonAlpha Institute for Biotechnology, Huntsville, AL, USA.
Sarah K MeadowsHudsonAlpha Institute for Biotechnology, Huntsville, AL, USA.
C Luke MesserHudsonAlpha Institute for Biotechnology, Huntsville, AL, USA.
Andrew A HardiganHudsonAlpha Institute for Biotechnology, Huntsville, AL, USA.
Candice J CoppolaDepartment of Biological Sciences, The University of Alabama in Huntsville, Huntsville, AL, USA.
Emma C DeanHudsonAlpha Institute for Biotechnology, Huntsville, AL, USA.
Shan JiangDepartment of Developmental and Cell Biology, University of California Irvine, Irvine, CA, USA.
Daniel SavicPharmaceutical Sciences Department, St Jude Children's Research Hospital, Memphis, TN, USA.
Ali MortazaviDepartment of Developmental and Cell Biology, University of California Irvine, Irvine, CA, USA.
Barbara J WoldDivision of Biology, California Institute of Technology, Pasadena, CA, USA.
Richard M MyersHudsonAlpha Institute for Biotechnology, Huntsville, AL, USA. rmyers@hudsonalpha.org.
Eric M MendenhallHudsonAlpha Institute for Biotechnology, Huntsville, AL, USA. eric.mendenhall@uah.edu.
HudsonAlpha Institute for Biotechnology · USUniversity of Alabama in Huntsville · USUniversity of California, Irvine · USCalifornia Institute of Technology · USUniversity of Alabama at Birmingham · USSt. Jude Children's Research Hospital · US

Funding

Toward a comprehensive functional annotation of the human genomeU54HG006998 · NHGRI · HUDSON-ALPHA INSTITUTE FOR BIOTECHNOLOGY · PI MYERS, RICHARD M · 2012 to 2016
$17.5M
An ENCODE ChIP-seq pipeline using endogenously tagged human DNA-associated proteinsUM1HG009411 · NHGRI · HUDSON-ALPHA INSTITUTE FOR BIOTECHNOLOGY · PI MENDENHALL, ERIC, MYERS, RICHARD M · 2017 to 2021
$8.8M
NHGRI NIH HHS U54 HG006998NHGRI NIH HHS UM1 HG009411
6 · The paper itself

Abstract

Transcription factors are DNA-binding proteins that have key roles in gene regulation

Indexed as

Chromatin Immunoprecipitation SequencingMolecular Sequence AnnotationChromatinDatasets as TopicDNA-Binding ProteinsEnhancer Elements, GeneticHep G2 CellsHumansNucleotide MotifsPromoter Regions, GeneticProtein BindingRegulatory Sequences, Nucleic AcidTranscription FactorsChromatinDNA-Binding ProteinsTranscription Factors

Identifiers

PMID32728244
PMCPMC7398277
OpenAlexW3045747015

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.