Evidence map›Paper›PMID 32728062›Full record

ArticleScientific reports2020

Virtual screening identifies broad-spectrum β-lactamase inhibitors with activity on clinically relevant serine- and metallo-carbapenemases.

Francesca Spyrakis, Matteo Santucci, Lorenzo Maso, Simon Cross, Eleonora Gianquinto, Filomena Sannio, Federica Verdirosa, Filomena De Luca, Jean-Denis Docquier, Laura Cendron and 4 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 34 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Approachable Synthetic Methodologies for Second-GenerationPharmaceuticals (Basel, Switzerland) · 2024
    Review
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. New Carbapenemase Inhibitors: Clearing the Way for the β-Lactams.International journal of molecular sciences · 2020
    Review
  14. Review
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 7 institutions in 2 countries.

Francesca Spyrakis *Department of Life Sciences, University of Modena and Reggio Emilia, Via Campi 103, 41125, Modena, Italy.
Matteo Santucci *Department of Life Sciences, University of Modena and Reggio Emilia, Via Campi 103, 41125, Modena, Italy.
Lorenzo Maso *Department of Biology, University of Padua, Viale G. Colombo 3, 35121, Padua, Italy.
Simon CrossMolecular Discovery Limited, Centennial Avenue, Unit 501 Centennial Park, Borehamwood, Hertfordshire, WD6 3FG, UK.
Eleonora GianquintoDepartment of Drug Science and Technology, University of Turin, Via Pietro Giuria 9, 10125, Turin, Italy.
Filomena SannioDepartment of Medical Biotechnology, University of Siena, Viale Bracci 16, 53100, Siena, Italy.
Federica VerdirosaDepartment of Medical Biotechnology, University of Siena, Viale Bracci 16, 53100, Siena, Italy.
Filomena De LucaDepartment of Medical Biotechnology, University of Siena, Viale Bracci 16, 53100, Siena, Italy.
Jean-Denis DocquierDepartment of Medical Biotechnology, University of Siena, Viale Bracci 16, 53100, Siena, Italy.
Laura CendronDepartment of Biology, University of Padua, Viale G. Colombo 3, 35121, Padua, Italy.
Donatella TondiDepartment of Life Sciences, University of Modena and Reggio Emilia, Via Campi 103, 41125, Modena, Italy.
Alberto VenturelliTYDOCK PHARMA S.R.L., Strada Gherbella 294/b, 41126, Modena, Italy.
Gabriele CrucianiDepartment of Chemistry, Biology and Biotechnology, University of Perugia, Via Elce di Sotto 8, 06123, Perugia, Italy. gabri@chemiome.chm.unipg.it.
Maria Paola CostiDepartment of Life Sciences, University of Modena and Reggio Emilia, Via Campi 103, 41125, Modena, Italy. mariapaola.costi@unimore.it.
University of Siena · ITUniversity of Modena and Reggio Emilia · ITUniversity of Padua · ITUniversity of Turin · ITMolecular Discovery (United Kingdom) · GBTydock Pharma (Italy) · ITUniversity of Perugia · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacteria are known to evade β-lactam antibiotic action by producing β-lactamases (BLs), including carbapenemases, which are able to hydrolyze nearly all available β-lactams. The production of BLs represents one of the best known and most targeted mechanisms of resistance in bacteria. We have performed the parallel screening of commercially available compounds against a panel of clinically relevant BLs: class A CTX-M-15 and KPC-2, subclass B1 NDM-1 and VIM-2 MBLs, and the class C P. aeruginosa AmpC. The results show that all BLs prefer scaffolds having electron pair donors: KPC-2 is preferentially inhibited by sulfonamide and tetrazole-based derivatives, NDM-1 by compounds bearing a thiol, a thiosemicarbazide or thiosemicarbazone moiety, while VIM-2 by triazole-containing molecules. Few broad-spectrum BLs inhibitors were identified; among these, compound 40 potentiates imipenem activity against an NDM-1-producing E. coli clinical strain. The binary complexes of the two most promising compounds binding NDM-1 and VIM-2 were obtained at high resolution, providing strong insights to improve molecular docking simulations, especially regarding the interaction of MBLs with inhibitors.

Indexed as

Anti-Bacterial AgentsBacterial Proteinsbeta-Lactamase Inhibitorsbeta-LactamasesCrystallography, X-RayDatabases, ProteinDrug DesignDrug DiscoveryEscherichia coliHydrolysisLigandsMicrobial Sensitivity TestsMolecular Docking SimulationProtein BindingProtein ConformationRecombinant ProteinsAnti-Bacterial AgentsBacterial Proteinsbeta-Lactamase Inhibitorsbeta-LactamasescarbapenemaseLigandsRecombinant ProteinsSemicarbazidesSerineSulfhydryl CompoundsSulfonamidesTetrazolesthiosemicarbazide

Identifiers

PMID32728062
PMCPMC7391774
OpenAlexW3045838759

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.