Evidence map›Paper›PMID 32727975›Full record

ArticleMicrobes and environments2020

Mechanisms of Rice Endophytic Bradyrhizobial Cell Differentiation and Its Role in Nitrogen Fixation.

Teerana Greetatorn, Shun Hashimoto, Taro Maeda, Mitsutaka Fukudome, Pongdet Piromyou, Kamonluck Teamtisong, Panlada Tittabutr, Nantakorn Boonkerd, Masayoshi Kawaguchi, Toshiki Uchiumi and 1 more

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Article in Microbes and environments, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.9field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Teerana GreetatornSchool of Biotechnology, Institute of Agricultural Technology, Suranaree University of Technology.
Shun HashimotoGraduate School of Science and Engineering, Kagoshima University.
Taro MaedaNational Institute for Basic Biology.
Mitsutaka FukudomeGraduate School of Science and Engineering, Kagoshima University.
Pongdet PiromyouSchool of Biotechnology, Institute of Agricultural Technology, Suranaree University of Technology.
Kamonluck TeamtisongThe Center for Scientific and Technological Equipment, Suranaree University of Technology.
Panlada TittabutrSchool of Biotechnology, Institute of Agricultural Technology, Suranaree University of Technology.
Nantakorn BoonkerdSchool of Biotechnology, Institute of Agricultural Technology, Suranaree University of Technology.
Masayoshi KawaguchiNational Institute for Basic Biology.
Toshiki UchiumiGraduate School of Science and Engineering, Kagoshima University.
Neung TeaumroongSchool of Biotechnology, Institute of Agricultural Technology, Suranaree University of Technology.
Suranaree University of Technology · THKagoshima University · JPBiotechnology Institute · USNational Institute for Basic Biology · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bradyrhizobium sp. strain SUTN9-2 is a symbiotic and endophytic diazotrophic bacterium found in legume and rice plants and has the potential to promote growth. The present results revealed that SUTN9-2 underwent cell enlargement, increased its DNA content, and efficiently performed nitrogen fixation in response to rice extract. Some factors in rice extract induced the expression of cell cycle and nitrogen fixation genes. According to differentially expressed genes (DEGs) from the transcriptomic analysis, SUTN9-2 was affected by rice extract and the deletion of the bclA gene. The up-regulated DEGs encoding a class of oxidoreductases, which act with oxygen atoms and may have a role in controlling oxygen at an appropriate level for nitrogenase activity, followed by GroESL chaperonins are required for the function of nitrogenase. These results indicate that following its exposure to rice extract, nitrogen fixation by SUTN9-2 is induced by the collective effects of GroESL and oxidoreductases. The expression of the sensitivity to antimicrobial peptides transporter (sapDF) was also up-regulated, resulting in cell differentiation, even when bclA (sapDF) was mutated. This result implies similarities in the production of defensin-like antimicrobial peptides (DEFs) by rice and nodule-specific cysteine-rich (NCR) peptides in legume plants, which affect bacterial cell differentiation.

Indexed as

Nitrogen FixationBacterial ProteinsBradyrhizobiumCell CycleEndophytesGene Expression RegulationMutationOryzaPlant ExtractsPlant ProteinsSymbiosisTranscriptomeBacterial ProteinsPlant ExtractsPlant ProteinsBradyrhizobiumcell differentiationendophytenitrogen fixationrice

Identifiers

PMID32727975
PMCPMC7511792
OpenAlexW3045946411

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.