ArticleMicrobes and environments2020
TEMPURA: Database of Growth TEMPeratures of Usual and RAre Prokaryotes.
Article in Microbes and environments, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.
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Who cites it
31 citing papers in PubMed.
- Article
- Isolation of genome-predicted Caldatribacterium (Atribacterota) reveals pervasive microbial cultivation problem due to folate precipitation.Nature communications · 2026Article
- Genomic and evolutionary factors influencing the prediction accuracy of optimal growth temperature in prokaryotes.mSystems · 2026Article
- Decoding extremophiles: insights from bioinformatics, machine learning, and data-driven approaches.Briefings in bioinformatics · 2026Review
- Whole-genome prediction of bacterial pathogenic capacity on novel bacteria using protein language models with PathogenFinder2.Bioinformatics (Oxford, England) · 2026Article
- Diversity and distribution of bacterial DNA polymerases.Nucleic acids research · 2026Article
- Improved prediction of microbial optimal growth temperatures with neural networks and protein language models.Frontiers in genetics · 2026Article
- Machine learning prediction of bacterial optimal growth temperature from protein domain signatures reveals thermoadaptation mechanisms.BMC genomics · 2025Article
- Draft genome sequences ofMicrobiology resource announcements · 2025Article
- invertiaDB: a database of inverted repeats across organismal genomes.Nucleic acids research · 2025Article
- Shared-weight graph framework for comprehensive protein stability prediction across diverse mutation types.Briefings in bioinformatics · 2025Article
- G-quadruplex structures in 16S rRNA regions correlate with thermal adaptation in prokaryotes.Nucleic acids research · 2025Article
- RNA language models predict mutations that improve RNA function.Nature communications · 2024Article
- RNA language models predict mutations that improve RNA function.bioRxiv : the preprint server for biology · 2024Article
- Impacts of Groundwater Pumping on Subterranean Microbial Communities in a Deep Aquifer Associated with an Accretionary Prism.Microorganisms · 2024Article
- Mesophiles vs. Thermophiles: Untangling the Hot Mess of Intrinsically Disordered Proteins and Growth Temperature of Bacteria.International journal of molecular sciences · 2024Article
- Effects of small heat shock proteins from thermotolerant bacteria on the stress resistance of Escherichia coli to temperature, pH, and hyperosmolarity.Extremophiles : life under extreme conditions · 2024Article
- High-Temperature Tolerance Protein Engineering through Deep Evolution.Biodesign research · 2024Article
- The unique chemical and microbiological signatures of an array of bottled drinking water.Frontiers in microbiology · 2024Article
- Superior protein thermophilicity prediction with protein language model embeddings.NAR genomics and bioinformatics · 2023Article
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4 authors.
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Abstract
Growth temperature is one of the most representative biological parameters for characterizing living organisms. Prokaryotes have been isolated from various temperature environments and show wide diversity in their growth temperatures. We herein constructed a database of growth TEMPeratures of Usual and RAre prokaryotes (TEMPURA, http://togodb.org/db/tempura), which contains the minimum, optimum, and maximum growth temperatures of 8,639 prokaryotic strains. Growth temperature information is linked with taxonomy IDs, phylogenies, and genomic information. TEMPURA provides useful information to researchers working on biotechnological applications of extremophiles and their biomolecules as well as those performing fundamental studies on the physiological diversity of prokaryotes.
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