Evidence map›Paper›PMID 32727141›Full record

ArticleJournal of clinical medicine2020

Usefulness of Machine Learning-Based Gut Microbiome Analysis for Identifying Patients with Irritable Bowels Syndrome.

Hirokazu Fukui, Akifumi Nishida, Satoshi Matsuda, Fumitaka Kira, Satoshi Watanabe, Minoru Kuriyama, Kazuhiko Kawakami, Yoshiko Aikawa, Noritaka Oda, Kenichiro Arai and 8 more

Open access · goldAbstract read
In one paragraph

Article in Journal of clinical medicine, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed, 3 pooled it
6.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 3 syntheses or guidelines pooled it, 73 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Trial
  5. Review
  6. Article
  7. Review
  8. Review
  9. Review
  10. Article
  11. The Gut Mycobiome for Precision Medicine.Journal of fungi (Basel, Switzerland) · 2025
    Review
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Review
  19. Review
  20. Effect ofJournal of clinical medicine · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 3 institutions in 1 country.

Hirokazu FukuiDivision of Gastroenterology and Hepatology, Department of Internal Medicine, Hyogo College of Medicine, 1-1, Mukogawa, Nishinomiya 663-8501, Japan.
Akifumi NishidaCykinso Inc., 1-36-1, Yoyogi, Shinjuku, Tokyo 151-0053 Japan.ORCID 0000-0003-0296-6637
Satoshi MatsudaColo-proctological Institute, Matsuda Hospital, 753, Irino-cho, Nishi-ku, Hamamatsu, Shizuoka 432-8061, Japan.
Fumitaka KiraCykinso Inc., 1-36-1, Yoyogi, Shinjuku, Tokyo 151-0053 Japan.
Satoshi WatanabeCykinso Inc., 1-36-1, Yoyogi, Shinjuku, Tokyo 151-0053 Japan.ORCID 0000-0001-6757-3514
Minoru KuriyamaCykinso Inc., 1-36-1, Yoyogi, Shinjuku, Tokyo 151-0053 Japan.
Kazuhiko KawakamiColo-proctological Institute, Matsuda Hospital, 753, Irino-cho, Nishi-ku, Hamamatsu, Shizuoka 432-8061, Japan.
Yoshiko AikawaColo-proctological Institute, Matsuda Hospital, 753, Irino-cho, Nishi-ku, Hamamatsu, Shizuoka 432-8061, Japan.
Noritaka OdaColo-proctological Institute, Matsuda Hospital, 753, Irino-cho, Nishi-ku, Hamamatsu, Shizuoka 432-8061, Japan.
Kenichiro AraiColo-proctological Institute, Matsuda Hospital, 753, Irino-cho, Nishi-ku, Hamamatsu, Shizuoka 432-8061, Japan.
Atsushi MatsunagaColo-proctological Institute, Matsuda Hospital, 753, Irino-cho, Nishi-ku, Hamamatsu, Shizuoka 432-8061, Japan.
Masahiko NonakaColo-proctological Institute, Matsuda Hospital, 753, Irino-cho, Nishi-ku, Hamamatsu, Shizuoka 432-8061, Japan.
Katsuhiko NakaiColo-proctological Institute, Matsuda Hospital, 753, Irino-cho, Nishi-ku, Hamamatsu, Shizuoka 432-8061, Japan.
Wahei ShinmuraDepartment of Gastroenterology, JCHO Tokyo Shinjuku Medical Center, 5-1, Tsukudo, Shinjuku, Tokyo 162-8543, Japan.
Masao MatsumotoDepartment of Gastroenterology, JCHO Tokyo Shinjuku Medical Center, 5-1, Tsukudo, Shinjuku, Tokyo 162-8543, Japan.
Shinji MorishitaDepartment of Gastroenterology, JCHO Tokyo Shinjuku Medical Center, 5-1, Tsukudo, Shinjuku, Tokyo 162-8543, Japan.
Aya K TakedaCykinso Inc., 1-36-1, Yoyogi, Shinjuku, Tokyo 151-0053 Japan.ORCID 0000-0001-9190-0749
Hiroto MiwaDivision of Gastroenterology and Hepatology, Department of Internal Medicine, Hyogo College of Medicine, 1-1, Mukogawa, Nishinomiya 663-8501, Japan.ORCID 0000-0001-9844-642X
Tokyo Yamate Medical Center · JPHyogo Medical University · JPTokyo Institute of Technology · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Irritable bowel syndrome (IBS) is diagnosed by subjective clinical symptoms. We aimed to establish an objective IBS prediction model based on gut microbiome analyses employing machine learning. We collected fecal samples and clinical data from 85 adult patients who met the Rome III criteria for IBS, as well as from 26 healthy controls. The fecal gut microbiome profiles were analyzed by 16S ribosomal RNA sequencing, and the determination of short-chain fatty acids was performed by gas chromatography-mass spectrometry. The IBS prediction model based on gut microbiome data after machine learning was validated for its consistency for clinical diagnosis. The fecal microbiome alpha-diversity indices were significantly smaller in the IBS group than in the healthy controls. The amount of propionic acid and the difference between butyric acid and valerate were significantly higher in the IBS group than in the healthy controls (

Indexed as

gut microbiomeIBSmachine learningshort-chain fatty acids

Identifiers

PMID32727141
PMCPMC7464323
OpenAlexW3044970847

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.