ArticleMicroorganisms2020
Comparison of Environmental and Culture-Derived Bacterial Communities through 16S Metabarcoding: A Powerful Tool to Assess Media Selectivity and Detect Rare Taxa.
Article in Microorganisms, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.
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Who cites it
10 citing papers in PubMed.
- Occurrence ofMicroorganisms · 2026Article
- Helicoverpa armigera (Lepidoptera, Noctuidae) as a reservoir of potential polystyrene-degrading fungi.BMC microbiology · 2026Article
- Culturable Airborne Microorganisms in Urban and Coastal Recreation Areas (Southern Baltic Sea).Microbial ecology · 2026Article
- High-Throughput Amplicon Sequencing for Analyzing Microbial Communities of Insects.Methods in molecular biology (Clifton, N.J.) · 2025Article
- The Microbiota of Moon Snail Egg Collars is Shaped by Host-Specific Factors.bioRxiv : the preprint server for biology · 2024Article
- Identification of microbial community in the urban environment: The concordance between conventional culture and nanopore 16S rRNA sequencing.Frontiers in microbiology · 2023Article
- Culturable Bacterial Diversity from the Basaltic Subsurface of the Young Volcanic Island of Surtsey, Iceland.Microorganisms · 2022Article
- Article
- Structural and functional changes in the fungal community of plant detritus in an invaded Atlantic Forest.BMC microbiology · 2022Article
- Microbial diversity in tropical marine sediments assessed using culture-dependent and culture-independent techniques.Environmental microbiology · 2021Article
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Authors and funding
9 authors.
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Abstract
To compare environmental and culture-derived microbial communities, we performed 16S metabarcoding of uncultured samples and their culture-derived bacterial lawns. Microbial communities were obtained from freshwater river samples representative of an anthropization gradient along a river stream. Their culture-derived bacterial lawns were obtained by growing aliquots of the samples on a broad range medium and on two different semi-selective media. The V3-V4 16S rRNA region was amplified and sequenced. The bacterial diversity of water samples decreased from the upper to lower stream sampling sites and, as expected, these differences were mostly suppressed by the culture step. Overall, the diversity of cultured-derived bacterial communities reflected selectivity of each tested medium. Comparison of treatments indicated that the culture selected both detected and rare undetected environmental species. Accurate detection of rare environmental bacteria of the
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