Evidence map›Paper›PMID 32726325›Full record

ArticlePloS one2020

Integrative analysis of miRNA and mRNA sequencing data reveals potential regulatory mechanisms of ACE2 and TMPRSS2.

Stepan Nersisyan, Maxim Shkurnikov, Andrey Turchinovich, Evgeny Knyazev, Alexander Tonevitsky

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 70 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
70citing papers in PubMed, 2 pooled it
7.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

70 citing papers in PubMed, 2 syntheses or guidelines pooled it, 107 citations in OpenAlex.

  1. Pooled it
  2. The role of microRNAs in modulating SARS-CoV-2 infection in human cells: a systematic review.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2021
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10 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Stepan NersisyanFaculty of Biology and Biotechnology, Higher School of Economics, Moscow, Russia.ORCID 0000-0002-8830-4679
Maxim ShkurnikovP.A. Hertsen Moscow Oncology Research Center, Branch of National Medical Research Radiological Center, Ministry of Health of the Russian Federation, Moscow, Russia.
Andrey TurchinovichSciBerg e.Kfm, Mannheim, Germany.
Evgeny KnyazevFaculty of Biology and Biotechnology, Higher School of Economics, Moscow, Russia.ORCID 0000-0002-9414-2573
Alexander TonevitskyFaculty of Biology and Biotechnology, Higher School of Economics, Moscow, Russia.
National Research University Higher School of Economics · RUMinistry of Health of the Russian Federation · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Development of novel approaches for regulating the expression of angiotensin-converting enzyme 2 (ACE2) and transmembrane serine protease 2 (TMPRSS2) is becoming increasingly important within the context of the ongoing COVID-19 pandemic since these enzymes play a crucial role in cell infection. In this work we searched for putative ACE2 and TMPRSS2 expression regulation networks mediated by various miRNA isoforms (isomiR) across different human organs using publicly available paired miRNA/mRNA-sequencing data from The Cancer Genome Atlas (TCGA) project. As a result, we identified several miRNA families targeting ACE2 and TMPRSS2 genes in multiple tissues. In particular, we found that lysine-specific demethylase 5B (JARID1B), encoded by the KDM5B gene, can indirectly affect ACE2 / TMPRSS2 expression by repressing transcription of hsa-let-7e / hsa-mir-125a and hsa-mir-141 / hsa-miR-200 miRNA families which are targeting these genes.

Indexed as

BetacoronavirusGene Expression Regulation3' Untranslated RegionsAngiotensin-Converting Enzyme 2Coronavirus InfectionsCOVID-19Databases, GeneticGene Regulatory NetworksHumansJumonji Domain-Containing Histone DemethylasesMicroRNAsNuclear ProteinsPandemicsPeptidyl-Dipeptidase APneumonia, ViralRepressor Proteins3' Untranslated RegionsACE2 protein, humanAngiotensin-Converting Enzyme 2Jumonji Domain-Containing Histone DemethylasesKDM5B protein, humanMicroRNAsNuclear ProteinsPeptidyl-Dipeptidase ARepressor ProteinsRNA IsoformsRNA, MessengerSerine EndopeptidasesTMPRSS2 protein, human

Identifiers

PMID32726325
PMCPMC7390267
OpenAlexW3045770213

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.