Evidence map›Paper›PMID 32726198›Full record

ArticleMicrobial genomics2020

A publicly accessible database for

Martinique Frentrup, Zhemin Zhou, Matthias Steglich, Jan P Meier-Kolthoff, Markus Göker, Thomas Riedel, Boyke Bunk, Cathrin Spröer, Jörg Overmann, Marion Blaschitz and 15 more

Open access · goldAbstract read
In one paragraph

Article in Microbial genomics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
0.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 49 citations in OpenAlex.

  1. Article
  2. Newly emerging metronidazole-resistantEuro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2025
    Article
  3. Comparative Genomic Profiles ofMicroorganisms · 2025
    Article
  4. Microbial genomics · 2025
    Article
  5. Article
  6. Article
  7. Distribution ofEmerging microbes & infections · 2024
    Article
  8. Article
  9. Article
  10. Article
  11. SaLTy: a novelMicrobial genomics · 2024
    Article
  12. Comparative Genomics of Clostridioides difficile.Advances in experimental medicine and biology · 2024
    Article
  13. Core genome multilocus sequence typing of Clostridioides difficile to investigate transmission in the hospital setting.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2023
    Article
  14. Microorganisms · 2023
    Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Virulence and resistance patterns ofFrontiers in microbiology · 2023
    Article
  20. EnteroBase: hierarchical clustering of 100 000s of bacterial genomes into species/subspecies and populations.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 9 institutions in 4 countries.

Martinique FrentrupLeibniz Institute DSMZ, Braunschweig, Germany.
Zhemin ZhouWarwick Medical School, University of Warwick, UK.
Matthias SteglichLeibniz Institute DSMZ, Braunschweig, Germany.
Jan P Meier-KolthoffLeibniz Institute DSMZ, Braunschweig, Germany.
Markus GökerLeibniz Institute DSMZ, Braunschweig, Germany.
Thomas RiedelLeibniz Institute DSMZ, Braunschweig, Germany.
Boyke BunkLeibniz Institute DSMZ, Braunschweig, Germany.
Cathrin SpröerLeibniz Institute DSMZ, Braunschweig, Germany.
Jörg OvermannLeibniz Institute DSMZ, Braunschweig, Germany.
Marion BlaschitzAGES-Austrian Agency for Health and Food Safety, Vienna, Austria.
Alexander IndraAGES-Austrian Agency for Health and Food Safety, Vienna, Austria.
Lutz von MüllerChristophorus-Kliniken, Coesfeld, Germany.
Thomas A KohlResearch Center Borstel, Germany.
Stefan NiemannResearch Center Borstel, Germany.
Christian SeyboldtFriedrich-Loeffler-Institut, Jena, Germany.
Frank KlawonnBiostatistics, Helmholtz Centre for Infection Research, Braunschweig, Germany.
Nitin KumarWellcome Sanger Institute, Hinxton, UK.
Trevor D LawleyWellcome Sanger Institute, Hinxton, UK.
Sergio García-FernándezServicio de Microbiología, Hospital Universitario Ramón y Cajal, and Instituto Ramón y Cajal de Investigación Sanitaria (IRYCIS), Madrid, Spain.
Rafael CantónServicio de Microbiología, Hospital Universitario Ramón y Cajal, and Instituto Ramón y Cajal de Investigación Sanitaria (IRYCIS), Madrid, Spain.
Rosa Del CampoServicio de Microbiología, Hospital Universitario Ramón y Cajal, and Instituto Ramón y Cajal de Investigación Sanitaria (IRYCIS), Madrid, Spain.
Ortrud ZimmermannUniversity Medical Center Göttingen, Germany.
Uwe GroßUniversity Medical Center Göttingen, Germany.
Mark AchtmanWarwick Medical School, University of Warwick, UK.
Ulrich NübelLeibniz Institute DSMZ, Braunschweig, Germany.
German Center for Infection Research · DERed Espanola de Investigacion en Patologia Infecciosa · ESAustrian Agency for Health and Food Safety · ATUniversitätsmedizin Göttingen · DEUniversity of Warwick · GBWellcome Sanger Institute · GBChristophorus Kliniken · DEFriedrich-Loeffler-Institut · DEOstfalia University of Applied Sciences · DE

Funding

Biotechnology and Biological Sciences Research Council BB/L020319/1Medical Research Council PF451Wellcome Trust 098051Wellcome Trust 202792/Z/16/Z
6 · The paper itself

Abstract

PubMed holds no abstract for this paper.

Indexed as

Clostridium InfectionsDatabases, GeneticChromosome MappingClostridioides difficileDisease OutbreaksGenome, BacterialHumansPhylogenyRetrospective StudiescgMLSTClostridioides (Clostridium) difficilegenomic population structurehierarchical clusteringnosocomial infectionoutbreak

Identifiers

PMID32726198
PMCPMC7641423
OpenAlexW3045684808

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.